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LOCUS NM_206597 3130 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_206597 VERSION NM_206597.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3130) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3130) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3130) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3130) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3130) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3130) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3130) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3130) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3130) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3130) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3130) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3130) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3130) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3130) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3130) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3130) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3130) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3130) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_206597.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3130 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3130 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="silver" /map="1B5-1B7" /db_xref="FLYBASE:FBgn0004648" /db_xref="GeneID:30998" CDS 475..1782 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /EC_number="3.4.17.-" /note="CG4122 gene product from transcript CG4122-RF; CG4122-PF; svr-PF; carboxypeptidase E; pointed; DmSilver; chlorotic; carboxypeptidase D; silver; dwarp" /codon_start=1 /product="silver, isoform F" /protein_id="NP_996320.1" /db_xref="FLYBASE:FBpp0089125" /db_xref="GeneID:30998" /db_xref="FLYBASE:FBgn0004648" /translation="MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQE QLEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHG DETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLP NYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHG GAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGI TNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQ AHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGY QTSAPQQVRVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF" misc_feature 592..1476 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain I subgroup; Region: M14_CPD_I; cd03868" /db_xref="CDD:349440" misc_feature order(775..777,784..786,967..969,994..999,1123..1128, 1144..1146,1156..1158,1309..1311,1321..1323,1327..1329, 1387..1389) /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="active site" /db_xref="CDD:349440" misc_feature 1486..1722 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cd11308" /db_xref="CDD:200604" ORIGIN 1 tccggacggg ttgcttctga cgtcacggcg tgggagtgga gctatcgatt tttgcgtaaa 61 aatatcctgt tgacgtccgt tctttcagct ctctccgctc tcttctgtct ctcactcaca 121 cacacaggcg caggcgccac acatattgag tctggcaact tccctctccg gggacgatac 181 tcttcaattt ccccactgtg cgcggcgact gaggcagcgg cagcggcggc ggcagaggcg 241 ggcgaatggg cgcttaaggc caatcaacgc agcaaatttt caaacagttg acttttcgag 301 cctgagctgc aacgacgacc cacgacgaac ggaggcccga cggacatata agaagagagc 361 gagttgtgtg cgggagagag ctgagaagaa gcggaggaaa aataactgtt tctcgctcaa 421 ttcgcacgcc agtgataaaa acaacataat ctcgacaaga ttgcaaatcg caagatgcca 481 actctgggtc tcctgttcgc ctccatcggc attgccgtgc tggcgatggg tgtgccgcat 541 tgcaggggct acaccatcaa ggaggacgaa tccttcctgc agcaaccgca ctatgctagc 601 caagagcagc tggaggacct gtttgctggc ctggagaagg cgtaccccaa tcaggccaaa 661 gtccacttcc ttggtcgatc tctagaagga cgaaatctgc tcgccctgca aatctcgcgg 721 aacacccggt cgcggaatct ccttacacct ccagtaaagt acatagccaa tatgcatgga 781 gacgaaacgg tgggcaggca gctccttgtt tatatggcac aatatctgct cggtaatcac 841 gaaagaatca gcgacctggg ccagctggtc aacagcaccg atatctactt ggtgcccacg 901 atgaatccag atggctatgc gttgtcccag gaaggcaact gcgagtcgct gcccaactat 961 gtgggtcgtg gcaatgcggc caacatcgat ttgaatcgcg atttccccga tcgcctggag 1021 cagagccatg tccaccagtt gcgcgcccag tctcgtcagc cggaaacagc agccctggta 1081 aattggatcg ttagcaaacc gtttgtgctc tccgccaatt tccatggcgg agctgttgtg 1141 gccagctatc cctatgacaa ctccttggct cacaatgagt gctgcgagga gagtttgact 1201 ccggatgatc gggtcttcaa gcagctggcc cacacctatt ctgacaacca tccgattatg 1261 agaaagggca acaattgcaa cgatagcttc tcgggaggta tcaccaacgg agcccactgg 1321 tatgagttgt ccggtggaat gcaggacttt aactatgcgt ttagcaactg tttcgagctg 1381 accatcgagt tgtcgtgctg caagtatccg gcagcaagca ctttgcccca ggaatggcag 1441 cggaacaagg catccctgct gcagctgctg cgccaggcac atatcggcat caagggcctg 1501 gtgaccgatg ccagtggctt tccaatagcc gatgccaatg tctacgtggc tggactagag 1561 gagaaaccca tgcgcacttc caaacgtggc gaatactgga ggcttttgac cccgggactc 1621 tatagcgtgc acgcctccgc ttttggttac cagaccagtg ccccgcaaca ggtccgggtg 1681 accaacgata accaggaggc cttgcgcctg gactttaagc ttgcgcccgt cgagacgaac 1741 tttgatggta ttagcagttt ttacagtccc tattatttct agagagggat gcaacggaaa 1801 tacctatata tatgcgcata tatattatat tgggcagttc caaaatgcta tacatatatc 1861 cacatttagc gatgcatagt attctctgct ctcctgccct ctccgcacta tccttgtact 1921 atatatgtta tctccgccat tcccgaatcc agatatacaa ccattttgca tgttcatttg 1981 ctccctctca tttagaacct ttatttgttt accgcgagag ctagcagaaa ataaacaatg 2041 ttggctgtcg tgtggatgaa ttggtttggt tttgtctcga atcttttgta catacacttt 2101 tttaatttat cttttaaaaa cttctgtttc atttttatgt ttttttcgca ttttcatacg 2161 cttatatgcc agcctatgtt ccttccacgc cattacttca gacgcgcaca tatttagtgg 2221 atgcttgatt tgtatataga gaacgtatta agaacaaaca cgaagaaata gcaaaccaaa 2281 taacgaaatg aaataaatta aggaaataag cgaattgtac ttaggcaata tgcagaaatt 2341 ggcccactta tggtcatcga atgacacatt cccaatacga atcggttata gctttatcaa 2401 tattcccctt atcttccgca caccctaaaa catattgtca agtattttag caacgatgca 2461 aaaaaactat gataaatcca aagcccacta catgaaccta ctgctaaata tactgtatac 2521 taaatagact gtatgcgcac tctatggtta gtcctatctg gaatgattgt tgagcattta 2581 tccaaaaaca aaagaaccta catttgatag tgaggcgaaa ttattatcaa ttccggtccg 2641 acgcgtgctc acgcatggct tttgatatat actatagacg agaacaggtt acaatcaaat 2701 gaagaatatt gcaatggcga gaaccttgcg aagtataaat aaaatattaa tgttcgcttg 2761 ctgcgtttta ttttcattca ttgctcttta attcggtctc taaatgaatt ttttgttttc 2821 gagcacatta ttggtgtttt caaaatctgg tgcagtgttt tattaatcac tcgtttttga 2881 aaaaaatgag attttatttg agatcatttt caattcatta atcatcgaat tcaggacata 2941 ttttttcttt attctgatct ttagcaattt tactttcttt ttggtttcgc agtacgactt 3001 agtttttcca tttttctttt gtttcaaagg ccttatatgt agcctaacgg tggagtcatg 3061 gttagggacg ttcaagaaac tcccagtcac atctaaatga aatttaaaat gtatctttca 3121 ctaagtacct