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LOCUS NM_176721 2840 bp mRNA linear INV 26-DEC-2023 D (CG17754), mRNA. ACCESSION NM_176721 VERSION NM_176721.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2840) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2840) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2840) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2840) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2840) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2840) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2840) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2840) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2840) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2840) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2840) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2840) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2840) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2840) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2840) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2840) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2840) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2840) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_176721.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2840 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2840 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /map="8D3-8D3" /db_xref="FLYBASE:FBgn0030114" /db_xref="GeneID:31873" CDS 287..2164 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="CG17754 gene product from transcript CG17754-RD; CG17754-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_788894.1" /db_xref="FLYBASE:FBpp0071250" /db_xref="GeneID:31873" /db_xref="FLYBASE:FBgn0030114" /translation="MSAVNQKESPSRDSTASTSGHISMLADNTLESLSRDYSLGSLNS AGSQDEFFRCRDHADNILKRMQLYVDSQQLCDVVLIAGIDGKRVPAHRLVLSASSAYF SAMFTGSLRETKEQEVTLGEVHGDALHLLVQYCYTGFIEMREDTVETLLATACLLQLN AVVTACCNFLARQLHPSNCLGFAFFAEQQSCTTLLRLAQAYTCQYFMQVCQNQEFFQL NADQLGKLLSSDDLNVPSEQDVFHSLMSWVRHDSAAREQHIPELLALVRLPLLQPAFI MDHVENVCNANECQQLVMEAFKWHLMPERRSRIATERTTPRKSTVGRLLAVGGMDAHK GAISIESYCPRLDKWTPWKHMTGRRLQFGAAVMEDKLILVGGRDGLKTLNTVESLDLN TMAWAPLNAMATPRHGLGVAVLEGPLYAVGGHDGWSYLNTVERWDPIARTWSYVAPMS SMRSTAGVAVLGGRLYAVGGRDGSVCHRSIECYDPHTNKWSLLAPMNRRRGGVGVTVA NGFLYALGGHDCPASNPMVCRTETVERYDPATDTWTLICSLALGRDAIGCALLGDRLI VVGGYDGNHALKSVEEYDPVRNGWNELAPMAFARAGACVVAIPNVIPPAAQQPPPSAT V" misc_feature 497..2059 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="kelch-like protein; Provisional; Region: PHA03098" /db_xref="CDD:222983" misc_feature 1361..1492 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1502..1633 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1643..1777 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1784..1933 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1943..2074 /gene="CG17754" /locus_tag="Dmel_CG17754" /gene_synonym="BcDNA:LP02641; Dmel\CG17754" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" ORIGIN 1 acgcatacac gggcgctcgt gcagcttgat acagttacag ttacagatcc agcacgcaat 61 tcgcggccaa ttgaaacgat tcaaagatcg cgagtggaat agatcggagg cgacaccaac 121 acaccaacac aacagcacac agaccgccac cccctccatc ggcctcaccg attcgcgatc 181 cacgatccgc cttctgccaa ccgccgccag ccagttgctt ccagccagtg atccgatgca 241 gacgtttcgc tgaaaaggag cgcacagcca gaacagaaga agaaccatgt cggcggtgaa 301 ccagaaggag agtcccagcc gggactcgac ggcctccaca tccgggcaca tatcgatgct 361 ggctgacaac acattggaat cgctgtcgcg ggactacagc ctgggcagct tgaactcggc 421 gggcagccag gatgagttct ttcgctgccg agaccatgcg gacaatatac tcaaacggat 481 gcagctctac gtggatagcc agcagctgtg cgatgtggtc ctaatcgctg gcatcgatgg 541 aaagagggtg cccgcccacc gcctggtgct atcggcgtcg agcgcctact tctcggccat 601 gttcacggga tcgctgcgcg agaccaagga acaggaggtg accctcggtg aagtgcacgg 661 cgatgcactg catctgctgg tccagtactg ctacaccggg ttcattgaga tgcgcgagga 721 caccgtggag acgctgctgg ccaccgcctg tctgctgcag ctgaatgccg tggtgaccgc 781 ctgctgcaac ttcctggccc gccagctcca tccatccaac tgccttgggt tcgccttctt 841 tgcggagcaa cagagctgca ccacgctgct gcgtctggcg caggcctaca cctgccagta 901 ctttatgcag gtgtgccaga atcaggagtt cttccagctg aacgccgatc agttgggcaa 961 gctgcttagc agcgatgatc tcaatgtgcc ctcggagcag gatgtctttc acagtctgat 1021 gtcgtgggtg cgccacgatt ccgctgcccg tgagcagcac ataccggagc tgttggccct 1081 ggtgcgactg cccctactgc agccagcgtt tatcatggac cacgtggaga acgtttgcaa 1141 tgccaacgag tgccagcagc tggttatgga ggcattcaag tggcacctga tgcccgagcg 1201 ccgatcccgg atagccaccg agcgaacaac gccgcgcaaa tccacggtgg gtcgtctcct 1261 ggccgtcggc ggcatggatg cccacaaggg cgccatcagc atcgagagct actgcccgcg 1321 tttggacaag tggacaccgt ggaagcacat gaccggtcgt cgactgcaat tcggcgctgc 1381 tgtcatggag gataaactga tcctagtggg cggacgtgat gggctaaaga ccctgaacac 1441 cgtagagagt ttggacctga atacaatggc ctgggcaccg ctcaatgcca tggccacacc 1501 ccgtcatgga ctgggcgtgg cggtgctgga gggtccactc tatgcggtgg gcggtcacga 1561 cggctggagc tacctgaaca ccgtggagag atgggatccc atagcgcgca cttggagcta 1621 tgtggcaccc atgtcctcga tgcgttccac cgccggcgtg gctgtcctgg gcggtcgcct 1681 gtatgcggtg ggcggacgtg atggttccgt ctgtcatcgc tccatcgagt gctacgatcc 1741 gcacacgaac aaatggagcc tactggcgcc gatgaacagg agacgcggcg gcgttggcgt 1801 gacggtggcc aatggtttcc tgtacgcctt gggtggccac gactgtccgg ccagcaatcc 1861 aatggtctgc cgcacggaga cggtggagcg ctacgaccca gccaccgata cctggactct 1921 gatctgctca ctggctttgg gccgggacgc gatcggctgt gccctgctgg gcgatcgcct 1981 gatcgtcgtc ggcggctacg atggcaatca tgcgctgaag agcgtcgagg agtacgaccc 2041 ggtgcgcaat ggatggaacg agctggcgcc catggctttc gcaagggccg gcgcctgtgt 2101 ggtggcgatt ccgaatgtca taccgccggc ggctcaacag ccgccgccca gtgctacagt 2161 ttagtccaaa cccaatccac tttcggttgc agtgtaggct cgttaattgc atcgcttatt 2221 tcggatagaa gggccagatg tttggaaacg atttgcattt agcacccagc caaatttata 2281 cgcgaaattc ctattagata cccattattt gggtagagct ttataaattg catttaatgt 2341 tagtaaattt gtcaagatgt ttcgctcggc agttaatgct gcacacaaac tgtagatttt 2401 atacctttct tgcattaatc ttaaaaatcc aaacattcca cgtttacaaa agatattttc 2461 ccaaatttac cagttcatgt aaagcatttc catttacttg tagatattaa ggaactttag 2521 gaggcaataa tcaaaagtag ttttataagt agcgtggtct gaaagcgatg cacttagcga 2581 gagagcactg cacccgttct atagtagttg ttgttactgt tgctgtgagc tgctcgtggt 2641 tgttgctcgt gtttcctaac ccggcaagtt tgaaactgca gctcaccttc gcctcgcctc 2701 gctctcgtct gtgttctgac atgattccct gtggtatggc atacacccag aactcaccca 2761 ctttccgcac cgcacacccc aacccagtat tttccccata actctgctct tttcggcttg 2821 aatctaaaaa taagtaaatc