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LOCUS NM_167377 3279 bp mRNA linear INV 26-DEC-2023 C (CG11178), mRNA. ACCESSION NM_167377 VERSION NM_167377.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3279) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3279) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3279) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3279) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3279) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3279) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3279) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3279) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3279) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3279) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3279) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3279) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3279) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3279) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3279) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167377.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3279 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3279 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /map="12A8-12A8" /db_xref="FLYBASE:FBgn0030499" /db_xref="GeneID:32315" CDS 538..2661 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /note="CG11178 gene product from transcript CG11178-RC; CG11178-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_727720.1" /db_xref="FLYBASE:FBpp0311349" /db_xref="GeneID:32315" /db_xref="FLYBASE:FBgn0030499" /translation="MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNEC PSGWKYLPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRTAD LTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKAYQQLNACLQD DESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRVVCFGSPVRQMCVLILGMA SLVPRLLEKGFQEVACVRTSRPLSPMPDFTDSLQREAQAEAEAELEAVASVAAATDEQ KLTPESATAVEGEAEELALVSSAASAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLT REASVDTLASNLAALCAVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVI GTSNVLFQQKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQCFQEWYDVR PEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKINQAVNTTSRAVGGAISQ AKGAFSSWWSSITTAPPNATNAGPATSSSNGQEGDVSEGAAAQEISVTFQNHKDVEDL DVAGVSIHLAGQEEAHESHESQSVSCDKPQGIVEIGREAELLDKTAQSEEPKIAAASQ AGRPGCGGDVATSAVERSSGDVFIV" misc_feature 568..1956 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /note="Transport protein Avl9; Region: Avl9; pfam09794" /db_xref="CDD:430832" ORIGIN 1 atgtgtatca gtagtcaagc caacaaaatc gcgactaaaa ccaaaatgtt acaactattt 61 caacatactc gtaatgatag tttcgatttt gttttatttt cgttcatatt agcgtgattc 121 taattcttca atggttattt caaattcaaa agtaaccgcc aattttcgta ctggtgtagt 181 cgataatgcc gttggtcgaa gcgaaacata tcgataaccg gcaaatgcac atctaattgg 241 agtacaaaat aacgcctcct gatatcgata cgctatcaca aacaagaaaa tagaataaaa 301 acaaaatcgc ttggaaatcg taaagaaaga aagttaaata cgacagatag ataattgcaa 361 cacaaaataa gtgcgccgtg gtccgaatag aacaacaatt gcgtggcgtg gttacacgag 421 tgcgagcgag agggccgatg tggtagtggc caatccaatt ggatattcat tttgcaggca 481 aaaaacgcat tttttgtgga caccgcttgc tccttggtac aaggataacg accaacgatg 541 gccagcgagc cggagaacaa gccaccgatc ctgcacatcc tcgtggtggg cttccaccac 601 aagctgggct gccaggtgga gttctcgcat ccgccgctaa tctcgggctc cacgggacgc 661 aacgaatgcc cctccggctg gaagtacctg cccactctgg ctctgcccga cggctcgcat 721 aactttgccg aggacacggt gttcttcaac ctgcccagtt tgtatgagcc ggctgagagt 781 atctacggcg tgtcctgcta tcgccagata cgcgtggaga agctaaagat ccggacagcg 841 gacctcacgc gcagcaccgt tcagaagtcc gtttgcatat tggcccgcct gcccatctac 901 gggtacatcg aggtgaagct agccctcatt gccgatgcct ttttcgatca gggcgacttc 961 tccggcacgg aactgctggc caaggcctat cagcagctaa atgcctgcct ccaggacgac 1021 gagtcgcgcc gcccgttgcg ccactttcac gtggggctgt cgctgcgcga gatcgtactc 1081 cactggcgcc acaagacgct aatgctcttc aaactaatgc tgctgcagcg acgagtggtg 1141 tgtttcggtt cgcccgtacg ccaaatgtgt gtgctgatcc tgggcatggc atcgctggtg 1201 ccgcggctgc tggagaaggg cttccaggag gtggcctgtg tgcgcacgtc gcgtcccctg 1261 tcgcccatgc cggatttcac tgactccctg cagcgggagg cgcaggccga agccgaagcg 1321 gaactggagg cagtggcttc cgtagcagct gccaccgatg agcagaaact gacgcccgag 1381 agcgccacag cggtggaggg cgaggccgaa gagctggccc tcgtctcatc cgcagcgtcg 1441 gcgggcgagg agcaggtcag tggcgatgac acgtcgacgc gttccacgcc caactcacag 1501 tcgcaggact catcgaacgg caggaacagc tcgctgacca gagaggccag cgtggacaca 1561 ctagcgtcca acctcgccgc cttgtgcgct gtcaatccgg atgagtatcg ggcaccggtc 1621 agcatcttcg ccagcggcaa cctctgcctg ccgtatctgt cgctaccgta catggacctg 1681 ctcagcgatc ccatggtgct ctcctatgtc atcggcacct ccaacgtgct tttccagcag 1741 aaacgtcagc tggctgacgt cctggtggac atcgaggcgg ccaatctgga tgcccacgat 1801 ccggagctca ggcgtcagct ggtgctgagc accgaggatc tgcgctacat ggactacatc 1861 atgaagcatg tgcaatcgcc aaaggaggat gccgagggca gcgagtactg gatacgggag 1921 cagtttcagg gctatattct cgcactcttg cgaactgctg tggctccaga tgccacgcca 1981 aaggacaacg atcatttcaa tgcgcacttc atgggcgcct tcaagcgcac ccaatgcttt 2041 caggaatggt acgacgttag gcccgaaccc gagttctttg aggccctgcc cgctggtcat 2101 cccttcgccg gcaccttgtc cgtggcggac atgaaactaa aactagcaca aaccatgcaa 2161 aatagcgaga gtgggcgaaa aatcaaccag gcggtaaaca cgacgagtcg tgcagtgggc 2221 ggtgccatat cccaggccaa gggcgccttc tccagctggt ggtcatccat cacgacggcc 2281 ccgcccaatg caacaaatgc agggcctgcg accagcagct cgaatgggca ggaaggggat 2341 gtaagcgaag gagctgcagc ccaagagatc tcagttacat tccagaatca taaggacgtc 2401 gaagaccttg acgtggcggg agtcagcatc cacctggctg gccaggaaga ggcacacgag 2461 tcgcacgagt cacagagcgt cagctgcgac aagccgcaag gcatcgtcga gattggacgc 2521 gaggcggagc tgttggacaa aactgcgcaa tcggaggagc ccaagattgc ggctgcaagc 2581 caagccggtc ggccaggatg tggcggcgat gtggccacct cggccgtgga gcgcagcagt 2641 ggcgatgtct tcattgtctg aggacgttag cactatcggg gtcattgtat agaattgaac 2701 taagctaaat gatatttatt tattacacaa catattgtct cagtctcaat gttgaattta 2761 taactactac tcgaacttcc cccctatttt tttgtatacc catacatatt ctgtagttgg 2821 ttgacttgtg gtacacagaa acctaggatt tatgatcgag cgacaatata ctatgagata 2881 catcactact aattgaaata atacctcatt ttcgtttatt ttaagcccaa aaatgacaaa 2941 atatatatct acgaatacga aaaaagcgca cacaaatgaa atatccaaat taattaattt 3001 aatagcaata aatgcaaacg tttccctgca acttttttgt ggcacaagtc aatcgcacgc 3061 taaactacac aaaattggcc aaatgataat attatttaat atttatagat acctacgctt 3121 aagttaccct tgccgtattt acccaccact cagtgtatac atatgtataa ccatgtaaag 3181 ctaaaccgtt ccaagtgcaa tttgtaatcc caaaaaaggc agcggagatc cgtaatgaaa 3241 tccgtaatac gtgtggcaat aaagaactta agaaatctg