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LOCUS NM_167337 3795 bp mRNA linear INV 26-DEC-2023 O-acyltransferase 1 (Agpat1), transcript variant B, mRNA. ACCESSION NM_167337 VERSION NM_167337.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3795) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3795) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3795) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3795) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3795) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3795) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3795) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3795) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3795) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3795) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3795) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3795) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3795) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3795) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3795) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3795) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3795) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_167337.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3795 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3795 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /note="1-Acylglycerol-3-phosphate O-acyltransferase 1" /map="11B16-11C1" /db_xref="FLYBASE:FBgn0030421" /db_xref="GeneID:32230" CDS 534..1565 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /EC_number="2.3.-.-" /EC_number="2.3.1.51" /note="CG3812 gene product from transcript CG3812-RB; CG3812-PB; Agpat1-PB" /codon_start=1 /product="1-Acylglycerol-3-phosphate O-acyltransferase 1, isoform B" /protein_id="NP_727641.1" /db_xref="FLYBASE:FBpp0073522" /db_xref="GeneID:32230" /db_xref="FLYBASE:FBgn0030421" /translation="MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSF NSIILIPAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVANHQ SSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVRGEKARETLND VNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQQIPILPVVFSSYCTFLND KKKILNSGRIVITTLPPVSTEGLTKDDIDVLMERVRSQMIETFKVTSAEALHRYKPIK KVGIPAASSASTSSTTTTTLASPGTAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGA AKASLLKTL" misc_feature 726..1310 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]; Region: PlsC; COG0204" /db_xref="CDD:439974" ORIGIN 1 cgatatttcg gtaccgctag ttgccacgaa agtcgctcga acgccggtaa cggaaattct 61 cagcaaacgc agcgcaacgt cgttttcgcg tcgccgtcga cgtcggcgtt gtgtcgtcgc 121 cgcagcagca gaaaataaaa ataaaagaga agaaaaagaa tcgaaataac tgcatacgaa 181 atagatcgaa ataaaaagta gtcgctttta ttaaaatcca caacaaacaa aagccgaaac 241 gaagaaagtg agcattcatt tgttgttggt gtgtcaagcg aattccacac gcagccgcca 301 attgtattaa attcgaattg tttaatttaa ttgtaaagcg catcgatcgg aacaacaagg 361 atatccacac acaaaccaca cacctaaaag actgtaatct gccttaacca taggaaagtc 421 agagaaagaa aagccggaag tcccatacag gatagcaaat cgggcgaaga tagcagaagg 481 catctggatc caggatctga aacggttgaa tcactaagca taaacataat caaatgatca 541 ccatgacttc gtttatcgaa ctgctgggac ttttcttgct gctgatgctg ccattcctct 601 atgagaccaa tcacatattc cgatactact tcaaattcct gatgtactac ggcatcgtgt 661 cgttcaactc gatcatcctc atcccggcat tcctcaccag accatgcgat gtccgcaatc 721 tgctatgggc gagcacctgg tgccaccgcg tttcgacgtt gattggcctg cgatgggagc 781 tgcgcggcaa ggagcatttg gccaaggacc aggcctgcat cattgtggcc aatcaccaaa 841 gctcgctgga tgtgctgggc atgttcaaca tctggcatgt gatgaacaag tgcacagtgg 901 tggccaaacg agagctcttc tacgcctggc cttttggctt ggcggcatgg ttggctggcc 961 taatcttcat cgatcgtgtg cgcggcgaga aggcgcgcga aacgctaaac gatgttaacc 1021 ggcgcatcaa gaagcaacgt atcaaactgt gggttttccc ggagggaacg cgccgcaata 1081 cgggcgcact gcatccgttc aaaaagggcg cctttcacat ggccatcgat cagcagatac 1141 ccattctgcc ggtggtcttc tcctcctact gcacattcct caatgataag aaaaagattt 1201 tgaattcggg tcgcattgtg attaccacgc tgccgccggt tagcaccgaa ggactaacca 1261 aggacgacat cgatgtgcta atggagcgtg tccgctccca gatgattgaa acgttcaagg 1321 tgacgtctgc ggaggcgttg catcgttata agcccattaa aaaggttgga attccagccg 1381 cctcatcagc atcaacatca tctacgacaa caacaacatt ggcatcaccg ggaactgctg 1441 tcactcccgt tgcggatgcg gcagtggctg ccgcagctgc cgtggccagt agcagttcgg 1501 catacggtca accgccgggc tacgaagccg gagccgcaaa ggccagcttg ctcaagacac 1561 tttaggctat gcagcaattc aattcaatcc aaacacacac acacacacag ccagccacac 1621 acactcatat ccaaaaaata cgaaacacct catggcgtag ctgaagtgtc acgttttggg 1681 ggcttttagt tggacacgtt aactggcaat cagctttatt tgggcctatt tgggaattct 1741 atagtccaca gttgtgcaat tatcgtacac gtgcagtatt tgttttgata ttattgttta 1801 aagtccaaac tatgttttgt catcatttta ttgcatactt ttcgtaattt atttctctca 1861 aaaatgactt tatgtaagaa tatttgtcat tagagtattc attttgaggc gtgtgaaaaa 1921 ttaataaggc aatgattgtt gagtgcttcg tgcctcaaga tatgaacaaa gcaaagacac 1981 tagaataatt ctagttatca tattttttaa tgaaatttat gaaattacag tagttataat 2041 aatttctatt gtacttcctt taattaatta gtatatttat taagtcattt gacttaaaat 2101 gatgtaacat taacattaaa agtgtttcaa aaaaaatatt tcgcttttaa aaaattgtca 2161 gatgagagac aaattagaat taaacataac aaattttaac aaacaaattt aaaaaacttt 2221 aaaattataa tagtcagggc gcgaatttgt aaaaattttt ttattttatc atattgctag 2281 gaaattggcc aaaaataccc taatatgtac aatgtaaatt cgtttcttcg atcagaattg 2341 atttcggccc gaaaatcgtc ttctagcaca acacgcacac atatacgcgt tctcgtctct 2401 tgtttttact cacacaagca agcaaattct atttttagat ttcttacgct ctcagcggga 2461 gtgagcggaa agagagtaat tttggccgtc aacaaaaaag tggcatcttg ttattctagt 2521 gtctttggtt ataccctgtt gaatggaatc gattgattca aaagcagaag cgaaagctgc 2581 tgtcgatttc aattttattt aattaactga aaaaaataag ttaaaaattg ctgcttactt 2641 gtaaatacca aatccgtacc actttaaaac aacgaattaa gaaaagtatt accactttaa 2701 ataatttagc aatatgaatt ttgatagtgc gctagtctta actgaaaagg tcaaatccca 2761 aataggtcta tgttaacaca cttttttcga acataaatca cctgtgtttg tttgtggaag 2821 tcaacatgtg catcattttg tagattttac gcacttgcat aatattttag acacatcgaa 2881 atgttaacga aacagtgtac ttgaaaagcc aattccatgt tacgatttcg gctacagtcc 2941 acgcagcaaa acatccactc actttcaaat agtttgacta attcaggcac caaaaaaatg 3001 agtattagga gtagcaatca caaaactgcg atcctcgact gtcagacttt aactcttttg 3061 taggcaacac ataccaaaaa gcaactaaaa cagcaaacca aaaaacatta actctatccc 3121 ttacacgatg caacaggaag aacagaagaa catgtctaac tcgaaatggc ttggattatt 3181 agggaattgt taaaatccaa gcaatttcga ttaggttttt atccgcctag attatatgat 3241 agttgcatgt tatcatttaa tcctgttgcc gcgtgtactt gttagatgat tacaccaaat 3301 gatatgtaat taaaattaaa taaatatcta aacacatatt gtgaatgacg actaatcttg 3361 caaacgacat tacatacttt atgtagggcg aattctggtt gatttttaca atcgaccact 3421 tgacgagcag ttaagccagt tctttttttt ttgtttaaaa caatacgtat tttattttta 3481 caagacattc cctaactagg ttagggttcc catttaaagg tatttcctta ctcgcttaca 3541 attgaatccc gaaatggatt caatgtacta tttatctaat atcacctcat ggcatctaag 3601 gaatttaagg gatctttgaa ctaacaccta catatttgtg tattgtattc aaatatattg 3661 tgtatctgtc tggtaaagtg ttaacttaac tttgtaaata ctatgcggtt tactttaaag 3721 acaaatcaaa ggcgatagtg tgcgaaagca aaaggaaaca attaaatacg agtataataa 3781 atattttttt caaat