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LOCUS NM_167302 3247 bp mRNA linear INV 26-DEC-2023 transcript variant B (Tango10), mRNA. ACCESSION NM_167302 VERSION NM_167302.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3247) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3247) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3247) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3247) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3247) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3247) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3247) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3247) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3247) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3247) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3247) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3247) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3247) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3247) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3247) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3247) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3247) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3247) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_167302.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3247 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3247 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="Transport and Golgi organization 10" /map="10D7-10D8" /db_xref="FLYBASE:FBgn0030330" /db_xref="GeneID:32125" CDS 418..2181 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="CG1841 gene product from transcript CG1841-RB; CG1841-PB; Tango10-PB; transport and golgi organization" /codon_start=1 /product="transport and golgi organization 10, isoform B" /protein_id="NP_727555.1" /db_xref="FLYBASE:FBpp0073397" /db_xref="GeneID:32125" /db_xref="FLYBASE:FBgn0030330" /translation="MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAG GGGAGAGPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSSED LDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVDGKEFPAHRVI LCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQFIKYLYVGQIEVTLQTVMP MLALSDKYNIRDLIDLCVDYMNKHVAKAATSGYLVSWLQYTLSFTPTHNDLTETLKRF LKWNLEMVAESRDFVEMDPAILILLLQQNDLVVTSEYKLFDILQTWLLHRREQMEATG SGGFMELIEQTVSHIRFGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDR VREVRATESGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEERFKIAVLI VGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLT LHVVITPMGSHTCRDTPPFQF" misc_feature 793..1134 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BTB_POZ_BTBD17; cd18292" /db_xref="CDD:349601" misc_feature 1165..1386 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BACK_BTBD17; cd18493" /db_xref="CDD:350568" ORIGIN 1 gggctgccag atctacgtaa tggataaatg tatttatatg gcacttaatt aaatgttgtg 61 ttatttttat ctaaaattgc ggaacccggg aaaatacaac tgaaaatgaa attgcatttg 121 tcggatccac aagaatacaa ttattacgga tgcgacgaat ccatccatat atcgcatatg 181 aagtgccatc ggtctgccct gctgtttgca atccatgcct ggcacactgc tgctgcgata 241 taaatcgtat cgtgtctgca tctgtctgtc gttgtttttg catttgaagt gagacttttt 301 gccgtgtctt tggctcgtcc ttacgaagcc gtcccgtagg ttgtccttgt gcacgttgtc 361 agcgcagaac aaatccctag ccgggtgcca gtctatacct aatatccccg tttcccgatg 421 aacgacaacg gtaacggcgg agcagcgcca gtctccggtg gagtgtgcgg tgttggtggt 481 gcgcacggag cggctggtgg cgctgatggt gctggtggtg ctggcggtgg cggcggatgc 541 ggggctggcg gtggaggtgc tggtgcaggt ccgggcgggg gtcccggggg cggagcagct 601 gctgcggacc tggctggcga ggcagctgga ggagcagcag gtggtgatgc agccattaat 661 aaccaagcta atgccaatgg aaccagcgag agcccagcga aaggacttaa ttctagcgag 721 gatctggacg ccaagcggcg caagtgtcgc gaaacggaag aaggccagga tgaagccagc 781 acgatgatcg atgcgaatag tgtgctcaat aagatcgcca acctgtacgc cgaacagctg 841 atgtcggaca tagtgctact ggtggacggc aaggagtttc ccgcccaccg cgtcatcctc 901 tgtgccagca gcgacgtctt tcaggtgatg ctaatgaatc cggagtggaa cgagtgcagc 961 aagcacgtga tcgaattgca cgaggaagcc tgctgttcgg cggtgtttcc gcagttcatc 1021 aagtacctat acgttggcca aatcgaggtc acgctgcaga cggtgatgcc aatgctggcg 1081 ctgagcgaca agtacaatat acgcgacctg atcgatctct gcgtggacta catgaacaag 1141 cacgtggcca aggcggccac cagcggttat cttgtgtcct ggctgcaata tacgctctcc 1201 ttcacgccca cccacaacga tctcaccgaa acactcaagc ggtttctcaa atggaacctc 1261 gagatggttg ccgagtcgcg ggactttgtt gaaatggacc cggccatact gatactgctg 1321 ttgcagcaga acgatctggt tgtcaccagc gagtacaaat tgtttgacat cctgcagacg 1381 tggctgctgc atcgtcgcga acagatggag gccactggca gtggcggttt catggaactg 1441 atcgaacaga ctgtgtccca catacgcttc ggcatgatga cgccgcgcca gctctcacac 1501 ctgctaatgg atccgctggt cgagtatcac aaagagttcc tcgtcgagcg cattgccatc 1561 ggcatgagct atcaatcggg ccatgaggat cgggtgcgag aggtgcgagc caccgaatcg 1621 ggtaagctgc agtttacgcc gcggctatat tggaacgaca cctggagcgt cgacatcgat 1681 gtgcacaact ttaccgcgat cgaggattat aagaactatg tgacctgctt cttttcgcag 1741 cgacacattg ccgagactga ggaggacgat ccctgcatga catgggaaat cgagtttttc 1801 ccgcgaggcg ttaggtataa caaggccaaa atggtatggg gcgaggacgt accaggctgc 1861 tctttgaaca cagtgcgtct acgggttacc tgcaagcatc aaaacatcgg agaggagcga 1921 tttaagatcg ccgtgctgat cgttggcatg caaaaccaga ttatgcacat ccgcacagtt 1981 gtagagcgta cggagtactt ctccgatacg tcgcgcgtcg tcaacctgga caacctgctg 2041 ccgtacgagg agctggagca cacatcactg tacttgagtc cccatctgac gggcaccgct 2101 cgcaacacgc ttaccctgca cgtggtcatc acgccgatgg gctcccacac ctgccgagat 2161 acgccgccgt ttcagttcta aaaaaaaaaa acacaaatta tgaagcggtc ctgtgggcat 2221 ctcaactata gcactccgta cttcccggcg catccacagg cacctcatgc atccacagcc 2281 accactgtat ttcaaactac catttaacat gtgtatgtat gtaaaaatcc aatgcgactg 2341 cgaatcccat gggctcaacc tttgcgatct taactggcgg tctacaccgg cccccaatcg 2401 atcacaactc gattgcaata tgatttgtta ttagtttatt gttttatatt acactatttc 2461 ctttaagtta ggcgcagcga gagttactga gtgagtgagt tcgtaggcag agccatatta 2521 aagtgattga ttggacacga cgcccatttg gtactgtatt caccttacca tttcgcagaa 2581 ttaccgcaaa tgaaaatgga ctatggaaag gagtttttct aataaacgtt aaactgtaaa 2641 ctaaaaaaga aaaccataaa atcgccgacg acatggctga gaaagagaga gagggtcact 2701 atttggctat ttgccatctc gtttgcatga ggcatcagtt ttaatgtttt acagcgcccg 2761 cttaggcttt tggatccctt tttacgagtg cgtttatggc ccgggatcaa catgtcgcgt 2821 ctcgggggcc tatctttatg tgtgctctac tgtccatata gtctacagtg cggaacatca 2881 aatatgtcat atttagatgg gactctgggc tctggtctcc ggatatccag atatccagat 2941 agccagatag ccaagacata acgaatatac atgcacagat gtgtgaatcg gttcaggtat 3001 cggccatcaa tcgaattgat ttaatcttgg cgttaatgta gttgttaaat aaaatgtctc 3061 ttcaaaaatc agctgtggtc tattattatt atgcgttttc attagactga actaaagagt 3121 gtagaattac tgtcatttaa cgatataatt tagtgatttc ggttttaatt aaattattgc 3181 ctaacgttga ccagtcattt tgtaaaataa cgtctctgag aaacctggaa taaaggtgtg 3241 taaaact