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LOCUS NM_167296 2421 bp mRNA linear INV 26-DEC-2023 variant B (PhKgamma), mRNA. ACCESSION NM_167296 VERSION NM_167296.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2421) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2421) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2421) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2421) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2421) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2421) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2421) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2421) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2421) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2421) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2421) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2421) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2421) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2421) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2421) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2421) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2421) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2421) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167296.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2421 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2421 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Phosphorylase kinase gamma" /map="10D5-10D5" /db_xref="FLYBASE:FBgn0011754" /db_xref="GeneID:32120" CDS 411..1670 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /EC_number="2.7.11.1" /EC_number="2.7.11.19" /note="CG1830 gene product from transcript CG1830-RB; CG1830-PB; PhKgamma-PB; phosphorylase kinase gamma" /codon_start=1 /product="phosphorylase kinase gamma, isoform B" /protein_id="NP_727548.1" /db_xref="FLYBASE:FBpp0089045" /db_xref="GeneID:32120" /db_xref="FLYBASE:FBgn0011754" /translation="MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKE TGKEFAAKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESDAF VFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIVHRDLKPENIL LDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLKCNMFEGSPGYSQEVDIWA CGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKYSFTSPEWADISEDPKDLIRKCLVVDP SQRITVKEVLRHPFFNQMLFEQNIDGLKRSLSTKSRRMSRITEIALLRKQSRFNARKK FQFAILVIRAIIRIRRLRFTAEPLHVEEAIRDPYRVKVLRKVIDGCAFRVYGHWVKKG EGQNRAALFENTPRTELHALYINNLSR" misc_feature 465..1283 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Catalytic domain of the Serine/Threonine Kinase, Phosphorylase kinase Gamma subunit; Region: STKc_PhKG; cd14093" /db_xref="CDD:270995" misc_feature order(495..500,504..509,513..515,519..521,558..560, 564..566,681..683,729..734,738..740,750..752,756..758, 864..869,873..875,879..884,888..890,921..923,930..932, 966..986,990..992) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="active site" /db_xref="CDD:270995" misc_feature order(495..500,504..509,513..515,519..521,558..560, 564..566,681..683,729..734,738..740,750..752,867..869, 873..875,879..884,888..890,921..923) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270995" misc_feature order(507..509,750..752,756..758,864..869,873..875, 879..881,930..932,966..986,990..992) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270995" misc_feature 918..986 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="activation loop (A-loop); other site" /db_xref="CDD:270995" ORIGIN 1 gtgccacctc cagttttgtg attgtgtcaa aaatacaggg ttttattgtt gcactagcaa 61 tttaatccga ggaatataaa ttttgtgtgg agttatgttc gagacgtcgt tgccagcgat 121 tcaagaggcg agcggtcaca cgtgtatgtg tttcactggc ggtgcgggcg ccaactccgc 181 caaaaagcgt actactttta accttagttg acattgaaat gtacccgctt agttggatgt 241 ccacgatgtt ggcattcgtt attaattaaa tcagccgcca acagctgagc gagagagcaa 301 tcgagagcga caggagagga tccacttcca atcgaatcgg gtggaatcga atagcagggg 361 cttgattcca aactgccgtt tcggcagccg gcaagatttc acgaaatcta atggccaagg 421 acgaggagga tgatctgctg cccgacaagg atgcggccaa gggcttctat gccaaatacg 481 agcccaagga gattctgggc aggggcatca gttcgaccgt gaggcgatgt atcgaaaagg 541 agacgggcaa ggagtttgcc gccaagatca tcgacttggg cgccaccaca gagtcaggcg 601 agacgaatcc atatcacatg ctggaagcaa ccagacaaga aatctcaata ctgcgccagg 661 tcatggggca tccctacata attgatctgc aggatgtgtt cgagtcagat gcatttgttt 721 tcctcgtctt cgagctgtgt cccaaaggtg aactcttcga ctatctgacc tctgtggtga 781 cgctatccga gaagaagacg cgcaccatta tgcgacaaat ctttgagggc gtcgagtaca 841 tacacgcgaa gagcattgtc catcgggatc ttaagcccga gaatatcttg ctggacgaga 901 accacaacgt taagatcacg gattttggct tcgccaagca gttgcaagag ggcgagaaac 961 ttacaaatct gtgcggaacg ccgggttatt tggctcccga aacgctcaag tgcaacatgt 1021 tcgagggatc ccccggctac tcgcaggaag tcgacatatg ggcctgtggc gtgattatgt 1081 ttacgctgct cgtcggttgt ccacctttct ggcaccgcaa gcagatggtc atgctgcgga 1141 atatcatgga gggcaagtac agcttcacct cgccggagtg ggctgatatt tcagaggatc 1201 ccaaggatct gatacgcaaa tgtctagtcg ttgatccttc gcaacgtata accgtcaagg 1261 aagtattaag acatccattc ttcaaccaaa tgctgttcga gcaaaacatt gatggcctca 1321 agcgcagcct gtcgaccaag tcccgacgaa tgagtcgcat cactgagatc gcactgctgc 1381 gcaaacaaag tcgcttcaac gcgcgcaaaa agttccaatt cgccatactc gtgatacggg 1441 ccatcattcg gatacggcgc ctacgcttca ccgccgagcc gctgcacgtt gaggaggcca 1501 tccgggatcc gtatcgcgtc aaggttctgc gcaaggtcat cgatggctgt gccttccgtg 1561 tctacgggca ttgggtcaag aagggtgagg gccagaatcg ggccgccctc ttcgagaata 1621 ctccccgcac ggagctccac gcgctctaca tcaacaatct cagccgatag aaggcggtcg 1681 ggcatggggc atgggccatg ggccatgggg aatggggcgt ggcggagtcg cgctgatcta 1741 cacaagcaca cacacacaca cacacacaga aagaaagaaa aaagaaaata agaggaaaca 1801 cagtaagcaa gaaaccaaga aacaaaccaa caaacgaatt agcaaaagct actactatga 1861 gaagcaggaa attgcgattg caacaggaca caccaaacac accaaaaagg attcaatcca 1921 tccatacatt cggattcgcc tcgttctgga cggacagcca acacgcaggt gtacatatat 1981 acgtatgtat gtatgtatgc atgcctagta acattacctc ccctgccttc ttcgtccttg 2041 tgattttgtt taatactttt taattcgatt ttattgcgtc taatgcgcgc cagccatcta 2101 gtgtaatcag ttagtgtagt gaatgtagcg ttcaaccacg gccatgcata ccacccagat 2161 ggtacatggc tatccagtgg tccaacgtta tgacccggcg ccagaacgag ccgaatcgga 2221 tgacgagatg cgattgattg ttgggttggg ggaatgtaca cacctcatct caccatactc 2281 cacacccaac taagcccaca caagcaagcg tacatgcata tgtattttct gttaatgatt 2341 ctattaaatt atttaattgt attgctaagc gtttacattt taattgttat gttgtagtat 2401 acacaataaa taaaaacaaa c