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LOCUS NM_167276 3371 bp mRNA linear INV 26-DEC-2023 variant B (Dlic), mRNA. ACCESSION NM_167276 VERSION NM_167276.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3371) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3371) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3371) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3371) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3371) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3371) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3371) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3371) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3371) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3371) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3371) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3371) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3371) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3371) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3371) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3371) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3371) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3371) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167276.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3371 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3371 /gene="Dlic" /locus_tag="Dmel_CG1938" /gene_synonym="CG1938; D-LIC; dlic; DLIC; dlic2; Dlic2; DLIC2; Dmel\CG1938; l(1)G0065; l(1)G0190" /note="Dynein light intermediate chain" /map="10A8-10A8" /db_xref="FLYBASE:FBgn0030276" /db_xref="GeneID:32057" CDS 290..1486 /gene="Dlic" /locus_tag="Dmel_CG1938" /gene_synonym="CG1938; D-LIC; dlic; DLIC; dlic2; Dlic2; DLIC2; Dmel\CG1938; l(1)G0065; l(1)G0190" /note="CG1938 gene product from transcript CG1938-RB; CG1938-PB; Dlic-PB; dynein light intermediate chain; dynein light interme- diate chain; DyneinLC; dynein light intermediate chain 2; dandelion clock; Dlic2" /codon_start=1 /product="dynein light intermediate chain, isoform B" /protein_id="NP_727503.1" /db_xref="FLYBASE:FBpp0073300" /db_xref="GeneID:32057" /db_xref="FLYBASE:FBgn0030276" /translation="MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWG WLEQLNHWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMR NNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQQWIRN FCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEKDAVLIPAGWDSLK KISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAEVQTEDEQAFLARQQEILKQGD QVRGESPLRSQGVGSNKSGPRTPGTTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLH KKSGSPGTGGPGGAGNPAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEID MSQSEC" misc_feature 290..1471 /gene="Dlic" /locus_tag="Dmel_CG1938" /gene_synonym="CG1938; D-LIC; dlic; DLIC; dlic2; Dlic2; DLIC2; Dmel\CG1938; l(1)G0065; l(1)G0190" /note="Dynein light intermediate chain (DLIC); Region: DLIC; pfam05783" /db_xref="CDD:368612" ORIGIN 1 gagatacggc ggcaacgtgc gcggaacagc agcacattct gtggtcgatt tgcatgtcct 61 ggatgggaca ggaccggaca ttgtgctgga gcagcagtcg gcgatattga atgaagtaca 121 aacacagggc agcacaaaac ttccatcaaa caaatctgta ctagtattag gcgacaatgc 181 caccggaaag acgacactca ttgccaaact gcagggcgtc gaggatccga agaagggttc 241 cggcctggag tatgcctaca ttgatgtcaa ggatgagtac agagacgaca tgacgcgttt 301 aggcgtttgg gtcctggacg gtgatccagg acacacaaac ctgctacact atgcgctcaa 361 cgaaacgaac tatgcacaca cactcgtcat cctcaccgtt tcgatgacgc agccgtgggg 421 ctggctggag cagctaaacc attggatcaa ggtcctcggc cagcacatcg atagcctgca 481 gctggacgcc aaagagaagg aggcggcccg ccagcgactg accaccacgt ggcagagcta 541 ctgtgaggtg ggcgacgatc tggatccagg ctcccccgtc aagcggacga tgcgcaacaa 601 ctcgatcgac gaggatgacc tgctgccgct gacggaggat gcactaatta caaatctggg 661 cctcgacatc gttgttgtgg tcacaaagac ggactacatg accacgctag agaaggagta 721 cgagtatcgt gacgagcact ttgacttcat ccagcagtgg atacgtaact tctgcctgcg 781 gcatggcact tcgctcttct acacgagcgt caaggaagac aagaactgtg atgtcctcta 841 caagtatctg acgcatcgaa tttatggtct accattccgt acgccagcgc tagtcgttga 901 gaaggatgcg gtactcattc cggctggctg ggatagcctg aagaagatta gtattttata 961 cgagaatatg catggagtca aggccgagaa tccctacaca gacattatca aatcgccacc 1021 aactagaaag gcggtttcca atcgcgaggc ggaagtgcag acggaggatg agcaggcatt 1081 cctggcacgc cagcaggaga tcctaaagca gggcgaccag gtgcgcggtg agtcaccact 1141 gcgatcgcag ggcgtaggca gcaataagag cggaccccga acgcccggca ccaccggaca 1201 gagttcgccc aaaaagattg atcccaagct gacgccagca acgcccggcg ccgaaggcgt 1261 tctagccaac ttctttaact cgctgctgca caaaaagtcg ggcagtccgg gtaccggagg 1321 tcccggcgga gcgggtaatc cggcgggtcc gggtcgcact gccaacggta cggatgcagt 1381 aatgacgccc gaaaagctgg ccgtgcgcac agatgcggcc gccgagcttg atcgattatc 1441 gcgcagtgtg aaaaaagaga ttgacatgtc gcagagtgag tgttgagccg tagtcaacca 1501 ggagcagcaa cacacacacc acagcagaac agcaacaaga gaaccacaac aacatgagaa 1561 cgttatttaa gcatcaagtg aagggtagag actcgtagag actcgttgag agtcgcagga 1621 tagctggata gccgcgaaag ggatcatcat tgggaacagc agtgctcgat cattcaatgg 1681 tccggtagtt ggtgtacggg cttttttatc agtttcgcaa ggggctagct tctaagttgt 1741 taagttgttc cacggaacgt gatcaatgcc cagagattgt tcttcataac caattcaaaa 1801 cttttaaggt actcatttga tgggttccat agccactagt gattcttttt acgagccttc 1861 tgctttatac tcaaacactt tcgataagaa atttaacaaa aaaaaaaaac caagggaaaa 1921 ctaaacaaaa cgaaaactag gaatgagaaa cataacgttg aacaagagtt gagacattcg 1981 ccacttaatg gataagctta ggaaaaatgt tttctatttg aaggagggaa attgtctgcg 2041 aggcatcttg ttgtgctcct cccagcgcag ctagctccgc tctgcatgtg tttaaagggc 2101 cttggcgaga tgacagagag agagagagag agagatagag agagagagga taatgataat 2161 gataatggta acgataatga taacactaag gataagtata aagtgaagta ggtttttttt 2221 tcgttcgcgg gtccacacac acatttgtat aataaattat ttaatgagct gtaaaatgta 2281 attaacaaat ggcagacaaa cgagagattc gaacacgatt caagatccct gcgatgatga 2341 gtatggcttg ctactagcct gtatgtactt tttaattata ttaattattt acacacaccc 2401 actcacactt gtgtcgattc ggtaggcgag acgtttacat tagtatttat accaggagac 2461 tttgaggcgc tcctcaattg tcgtgtgcac attttaagtt tgcttttgtt tcaaatccaa 2521 gcacaatcca aacctattcc aaacgatcca accaaccaac caaccaacga agcccattgt 2581 aattaatttt atgcctcaat cccttcgatt ttaatgtaga actctatcgt tatccgcccc 2641 agaagagcaa ccgcagtccg tctttatttt aaagccagtt tttatttaag ccattttaaa 2701 cgagcgtgca ccacgagcgg gtacgcatgc atgtgtcctg atcgaggaga ccaagttagg 2761 ccaaggctgg atcgcatatc gccaggcgaa gattactcta ttttactatg atttacttac 2821 atatatgatt cgaaacgaga agtagctttc cttttgccat atgtattcca ccaaatgtat 2881 gtatgctctt ctcgtctgga gatataattt ccataatatt tcacaatttt ccacaatttt 2941 tcatatcctc tccactgctc ttcctaccgc attcaactct ttgcctctcg ctctatgccg 3001 tgtgtcgtca gaagcaacca caaaaagcaa aatatatata attaacaata cataaaaacg 3061 gaaaaaatta actgaatgat ttgtgctaca gaaactattt ttatgtataa atacaaaata 3121 attatattaa atatattgta taacattata tataaatata taaaaagaaa acccagagca 3181 aattaaaaac cttgtgcaag cgaattattt aaacaaattg atcggtattc gaaaactccc 3241 aaacaaagaa caaagctaaa aaaacacaaa cacacacaca cacacaaaac taacttaatg 3301 taaattaaac acacacaaaa tatagacaac aaatcagcgt cgaaaattgc aacaaaaaag 3361 taaaataatt t