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LOCUS NM_167261 878 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_167261 VERSION NM_167261.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 878) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 878) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 878) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 878) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 878) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 878) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 878) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 878) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 878) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 878) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 878) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 878) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 878) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 878) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 878) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 878) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 878) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 878) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 31, 2011 this sequence version replaced NM_167261.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..878 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..878 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab at 9Fb" /map="9F13-9F13" /db_xref="FLYBASE:FBgn0052670" /db_xref="GeneID:32029" CDS 68..712 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="CG32670 gene product from transcript CG32670-RA; CG32670-PA; Rab9Fb-PA; Rab GTPase 9Fb" /codon_start=1 /product="Rab at 9Fb" /protein_id="NP_727472.1" /db_xref="FLYBASE:FBpp0073257" /db_xref="GeneID:32029" /db_xref="FLYBASE:FBgn0052670" /translation="MSQYDYLFKILVLGDIGVGKSCLLMRFSDNRFTEKHVCTVGMDF RVRNVELAGRMVMLQIWDTAGDERFKSLLPSYYRGAHGILLVYDITSSKSFRNIDGWL KEIRRMSSESVNVMLVGNKCDDLDNRQVRMEQGFNYANHRALGFYEVSAKSGANVNDV FNMLSVGIYNRLVIHTPNRLSGGQETEDTAEPPDEPINLAGKDRQRAKDSNTCC" misc_feature 89..562 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Region: Rab; cd00154" /db_xref="CDD:206640" misc_feature 89..94 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab subfamily motif 1 (RabSF1); other site" /db_xref="CDD:206640" misc_feature 107..130 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="G1 box; other site" /db_xref="CDD:206640" misc_feature order(113..133,161..163,182..184,260..262,425..430, 434..436,515..523) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206640" misc_feature 131..163 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab subfamily motif 2 (RabSF2); other site" /db_xref="CDD:206640" misc_feature order(161..163,182..202) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Switch I region; other site" /db_xref="CDD:206640" misc_feature 182..184 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="G2 box; other site" /db_xref="CDD:206640" misc_feature order(185..187,191..199,242..244,248..250,269..274, 281..283,293..295,308..310) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="effector interaction site [active]" /db_xref="CDD:206640" misc_feature order(185..190,194..196,248..253,272..274,284..292) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="GDI interaction site [active]" /db_xref="CDD:206640" misc_feature 185..199 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab family motif 1 (RabF1); other site" /db_xref="CDD:206640" misc_feature order(188..211,230..232,236..238) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:206640" misc_feature 236..250 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab family motif 2 (RabF2); other site" /db_xref="CDD:206640" misc_feature 251..262 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="G3 box; other site" /db_xref="CDD:206640" misc_feature order(260..262,266..277,281..298) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Switch II region; other site" /db_xref="CDD:206640" misc_feature order(269..277,281..286) /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab family motif 3 (RabF3); other site" /db_xref="CDD:206640" misc_feature 293..298 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab family motif 4 (RabF4); other site" /db_xref="CDD:206640" misc_feature 320..337 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab family motif 5 (RabF5); other site" /db_xref="CDD:206640" misc_feature 404..418 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="Rab subfamily motif 3 (RabSF3); other site" /db_xref="CDD:206640" misc_feature 425..436 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="G4 box; other site" /db_xref="CDD:206640" misc_feature 515..523 /gene="Rab9Fb" /locus_tag="Dmel_CG32670" /gene_synonym="CG2532; CG32670; Dmel\CG32670; DmRabX3; RabX3" /note="G5 box; other site" /db_xref="CDD:206640" ORIGIN 1 aacaagccaa gctaaatttg tcacttcagt tgaatcgttt tacatattaa accaaaccga 61 attaacgatg agccaatacg actatctgtt taagattctc gtcctgggtg acatcggcgt 121 gggcaaatcc tgcctgctga tgcgtttctc ggataaccga ttcaccgaga aacacgtgtg 181 cacggtgggc atggatttca gggtgcgcaa cgtggagttg gccggtcgga tggttatgct 241 gcagatctgg gataccgccg gcgatgagcg ctttaagtcg ctgctgccat cctattatcg 301 cggtgcccat ggcatactgc tcgtttacga cataacgtcg tccaaaagtt tccgaaacat 361 cgatggctgg ctgaaggaga tacggcgcat gtcttcggaa agtgtgaacg tcatgctggt 421 gggcaacaag tgtgatgatc tggataatcg tcaggtgcgc atggagcagg gtttcaacta 481 tgccaatcat cgggcactcg gcttttatga ggtttccgcc aagagtggcg cgaatgtaaa 541 tgacgtattc aacatgttgt cagttggcat atacaatcgt cttgtgattc ataccccaaa 601 tcgcttgtca ggtgggcaag aaacggagga cactgcagag ccaccggatg aaccaatcaa 661 tttagctggc aaagatcggc agagggccaa agacagcaat acctgctgtt aagcatctcg 721 acttcatttg acattattat cataaaaata atattttaaa atttctatac ttgcacaaca 781 agctccgtaa acttcttgcc caatgaaaaa ataaaacatt tgtaatgtga aacgggaaat 841 ttgcgaaaaa ttaacataaa taaaactttc ccagtttg