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Drosophila melanogaster uncharacterized protein, transcript variant


LOCUS       NM_167257               1773 bp    mRNA    linear   INV 26-DEC-2023
            A (CG1637), mRNA.
ACCESSION   NM_167257
VERSION     NM_167257.2
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1773)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 1773)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 1773)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 1773)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 1773)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 1773)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 1773)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 1773)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 1773)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 1773)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 1773)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 1773)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 1773)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 1773)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 1773)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 1773)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            On Jul 15, 2014 this sequence version replaced NM_167257.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..1773
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /map="9F5-9F7"
                     /db_xref="FLYBASE:FBgn0030245"
                     /db_xref="GeneID:32019"
     CDS             246..1607
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /EC_number="3.-.-.-"
                     /EC_number="3.1.3.2"
                     /note="CG1637 gene product from transcript CG1637-RA;
                     CG1637-PA"
                     /codon_start=1
                     /product="uncharacterized protein, isoform A"
                     /protein_id="NP_727464.1"
                     /db_xref="FLYBASE:FBpp0073264"
                     /db_xref="GeneID:32019"
                     /db_xref="FLYBASE:FBgn0030245"
                     /translation="MQRLQFALLASLLLLVLLLPGIRSTPIDQDVDIVHYQPEQVHLS
                     FGETVLDIVVTWNTRDNTNESICEFGIDGLHQRVKATQMPTKFVDGGAKKATQYIHRV
                     TLSHLKPNSTYLYHCGSELGWSATYWFRTRFDHADWSPSLAIYGDMGVVNAASLPALQ
                     RETQSGQYDAIIHVGDFAYDMDWENGEVGDEFMRQVETIAAYLPYMVCVGNHEEKYNF
                     SHYINRFSMPGGSDNMFYSFDLGPVHFIGFSTEVYYFTKFGIKQIVMQYDWLERDLIE
                     ANKPENRKKRPWIITYGHRPMYCSNDNGDDCANHETIVRKGLPMLDFFGLEPLFYQYG
                     VDIELWAHEHCYERMWPMYNYTVFNGSLAEPYVNPGAPIHIISGAAGNHEGREPFFKR
                     MPPWSAFHSQDFGYLRLKAHNGTHLHFEQVSDDKKGEVIDSFWVVKDKHGPYQSDLNS
                     KTL"
     misc_feature    357..638
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="Purple acid Phosphatase, N-terminal domain; Region:
                     Pur_ac_phosph_N; pfam16656"
                     /db_xref="CDD:465220"
     misc_feature    654..1559
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="purple acid phosphatases of the metallophosphatase
                     superfamily, metallophosphatase domain; Region: MPP_PAPs;
                     cd00839"
                     /db_xref="CDD:277318"
     misc_feature    order(654..656,897..905,909..914,918..920,930..944,
                     1002..1004,1008..1010,1029..1031,1068..1076,1089..1094,
                     1128..1130,1173..1181)
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="homotrimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277318"
     misc_feature    order(684..686,771..773,780..782,876..881,1125..1127,
                     1269..1271,1275..1277)
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="active site"
                     /db_xref="CDD:277318"
     misc_feature    order(684..686,771..773,780..782,876..878,1125..1127,
                     1269..1271,1275..1277)
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:277318"
     misc_feature    order(885..887,891..893,912..914,918..920,936..938,
                     996..1004,1029..1031,1167..1172,1176..1181,1215..1220,
                     1431..1433)
                     /gene="CG1637"
                     /locus_tag="Dmel_CG1637"
                     /gene_synonym="Dmel\CG1637"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277318"
ORIGIN      
        1 ccaaggtcac actgcacccg gattgttttt gttgtggctg cgcttataaa ttgctggata
       61 tttccatatt agtgctcatt ttttgttgtt cccgcaagcg aatttgtcga ttcccccgtt
      121 taactccaac gactccccga gccaagtgtc cccactttga caacgacgca attgtgattt
      181 ggcaatgttt ttgctgactg cgttactgtg caacaacaaa cacaagtaaa tacaaaacgg
      241 taaaaatgca gagactgcaa ttcgctctgc tagcgtcgct gctcctgctg gtgctgcttc
      301 ttccggggat taggagcact cccatcgacc aggacgtcga cattgttcac tatcagccgg
      361 agcaagtgca tctgtccttt ggagaaaccg tgctcgacat tgtcgtcacc tggaacacgc
      421 gcgacaacac caacgaatca atctgtgagt tcggcatcga tggactgcat cagcgagtga
      481 aggcgacgca aatgcccacg aaattcgtgg atggtggagc caaaaaggcc acccagtata
      541 tacatcgtgt gacgctgtcc cacctgaaac cgaatagcac ctatctctac cactgtggca
      601 gtgagttggg ctggtccgcc acctattggt ttcggacgcg attcgatcac gccgactggt
      661 cgccctcgtt ggcgatctac ggcgatatgg gcgtggtgaa tgcggcatcc cttccagcgc
      721 tgcagcgtga aacgcagagc ggccagtacg acgccatcat ccatgtggga gacttcgcct
      781 acgacatgga ctgggaaaac ggagaggtcg gcgacgagtt tatgcgccag gtggagacca
      841 tagccgccta cttaccatat atggtgtgcg tgggcaacca cgaggagaag tacaactttt
      901 cgcactacat caatcggttc agcatgccgg gtggatcgga taacatgttc tatagcttcg
      961 atcttggacc ggtgcacttc atcggtttta gcacagaagt ctattatttc actaagttcg
     1021 ggatcaagca gatcgtgatg cagtacgact ggctggagcg ggatttgatc gaggccaaca
     1081 agccagaaaa ccggaagaag cgtccctgga ttatcacata cggccatcgg cccatgtact
     1141 gcagcaatga caacggagat gactgtgcca atcatgagac aatcgttcga aagggtctgc
     1201 ccatgctgga tttcttcggg ctggagccac tcttttatca gtacggcgta gatattgaat
     1261 tgtgggcaca cgagcactgc tacgagcgga tgtggcccat gtacaactac accgtgttca
     1321 atggatcgct ggccgagccg tatgtgaatc ccggtgcacc aatacacatc atttcgggag
     1381 ctgccggcaa tcacgagggc agggagccat tcttcaagcg catgcctccg tggagtgcct
     1441 tccacagcca ggactttggg tatcttcgac tgaaggccca caacggcacc catctacatt
     1501 tcgagcaggt gtccgatgac aagaagggcg aggtcatcga tagtttctgg gtggtcaagg
     1561 acaagcatgg accgtaccag tctgatctca actcaaaaac tttgtgatat tttatgtcgt
     1621 catatactaa agtattttaa attcgggcac aaattcgaat gatttatatt cgcagcaatc
     1681 ggaccaagaa actatcctcc ttctaaacat atatatttta atgaaatgta attacagtta
     1741 tacgctcaaa taaaacaact atgtatgagt ggc