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LOCUS NM_167238 889 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_167238 VERSION NM_167238.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 889) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 889) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 889) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 889) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 889) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 889) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 889) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 889) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 889) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 889) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 889) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 889) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 889) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 889) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 889) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 889) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 889) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 889) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167238.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..889 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..889 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab at 9E" /map="9E1-9E1" /db_xref="FLYBASE:FBgn0052673" /db_xref="GeneID:318148" CDS 86..679 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="CG32673 gene product from transcript CG32673-RA; CG32673-PA; Rab9E-PA; Rab GTPase 9E" /codon_start=1 /product="Rab at 9E" /protein_id="NP_727438.1" /db_xref="FLYBASE:FBpp0071434" /db_xref="GeneID:318148" /db_xref="FLYBASE:FBgn0052673" /translation="MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTTRHRSTLGMDR RECSVEFADWRMGRMLQVWDTSDDERFKLLKATHCRSAHGILLVYDITSSKSFQNIDG WMKEIRRLCPDKVIVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVY DIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAAESLD" misc_feature 107..586 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases); Region: Rab; cd00154" /db_xref="CDD:206640" misc_feature 107..112 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab subfamily motif 1 (RabSF1); other site" /db_xref="CDD:206640" misc_feature 125..148 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="G1 box; other site" /db_xref="CDD:206640" misc_feature order(131..151,179..181,200..202,284..286,449..454, 458..460,539..547) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206640" misc_feature 149..181 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab subfamily motif 2 (RabSF2); other site" /db_xref="CDD:206640" misc_feature order(179..181,200..220) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Switch I region; other site" /db_xref="CDD:206640" misc_feature 200..202 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="G2 box; other site" /db_xref="CDD:206640" misc_feature order(203..205,209..217,266..268,272..274,293..298, 305..307,317..319,332..334) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="effector interaction site [active]" /db_xref="CDD:206640" misc_feature order(203..208,212..214,272..277,296..298,308..316) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="GDI interaction site [active]" /db_xref="CDD:206640" misc_feature 203..217 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab family motif 1 (RabF1); other site" /db_xref="CDD:206640" misc_feature order(206..229,248..250,260..262) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:206640" misc_feature 260..274 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab family motif 2 (RabF2); other site" /db_xref="CDD:206640" misc_feature 275..286 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="G3 box; other site" /db_xref="CDD:206640" misc_feature order(284..286,290..301,305..322) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Switch II region; other site" /db_xref="CDD:206640" misc_feature order(293..301,305..310) /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab family motif 3 (RabF3); other site" /db_xref="CDD:206640" misc_feature 317..322 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab family motif 4 (RabF4); other site" /db_xref="CDD:206640" misc_feature 344..361 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab family motif 5 (RabF5); other site" /db_xref="CDD:206640" misc_feature 428..442 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="Rab subfamily motif 3 (RabSF3); other site" /db_xref="CDD:206640" misc_feature 449..460 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="G4 box; other site" /db_xref="CDD:206640" misc_feature 539..547 /gene="Rab9E" /locus_tag="Dmel_CG32673" /gene_synonym="anon-AE003451.2; CG32673; Dmel\CG32673" /note="G5 box; other site" /db_xref="CDD:206640" ORIGIN 1 gaaaaaacaa aaacccagaa caagccaagc taaaattgtc acttcagtcg aatcgttata 61 catattaaac caaaccgaat taacgatgag ccaatacgac aatccgttta agattatcat 121 cctgggtgac agcggcgtag gcaaaacctg cctgctgatg cgtttctcgg ataaccaatt 181 caccacaaga caccggagca ctctgggcat ggatagaagg gagtgcagcg tggagtttgc 241 cgattggagg atggggagga tgctgcaagt ctgggacacc tccgacgacg agcgcttcaa 301 attgctgaag gcgacccatt gtcgcagtgc ccatggcata ctgctcgtct acgacataac 361 gtcgtccaaa agtttccaaa acatcgatgg ctggatgaag gagatacggc gcctgtgtcc 421 ggataaggta attgtcctgc tggtgggcaa caaaagtgat gatccgaacc atcgccaggt 481 gagcatggcg caggggttca actatgccca tcgtcagtca atctgctttg aagaggtttc 541 cgccaaaagt ggaaggaatg tatatgacat atttagctcg ttggcaatgg acatatatac 601 atatcgtcgt gtacattaca acccgttcag cttgacatct tggcaggaag aggaggacgc 661 tgcagagtca ctggattaac caattaatcg agctggcgca gatcggcaga aggccaatga 721 caccaatacc aatcatttga cattattatc attaatataa tattttaaca tttctataat 781 gtctacaagc tccgtaaact tcttgcctaa tgaaaaaata aaatatttgt aatgtgaaac 841 ggggaattgg cgaaaaatgt acatcaataa attacaacaa aaaattacg