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LOCUS NM_167216 3511 bp mRNA linear INV 26-DEC-2023 C (CG15312), mRNA. ACCESSION NM_167216 VERSION NM_167216.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3511) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3511) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3511) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3511) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3511) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3511) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3511) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3511) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3511) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3511) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3511) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3511) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3511) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3511) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3511) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3511) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3511) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3511) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167216.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3511 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3511 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /map="9B1-9B1" /db_xref="FLYBASE:FBgn0030174" /db_xref="GeneID:31940" CDS 664..1896 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="CG15312 gene product from transcript CG15312-RC; CG15312-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_727391.1" /db_xref="FLYBASE:FBpp0071358" /db_xref="GeneID:31940" /db_xref="FLYBASE:FBgn0030174" /translation="MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVS IPCIAQGNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATSAT TSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQRTKLIVRTVPG PVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNVSYKTPPANASFEHAWSRM DPINIAFNVRQMEVYRLAPNTTYEFRIWANNELGSGEVVTTNVTTLPETKEEASRTAD QSLVAKVMGAVLAIRMLGRMTMTMWPCHFRAPSSLASTIERLRRRVCICHRSTTAIKT RATTISIIISRTSSSTTTTTYGGRTTMMTTTTRRSTNPPWSGSSVKSPSSSPDPPSSV FETYLSTNTGHQGCCIAA" misc_feature 778..933 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 790..804 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409358" misc_feature 817..831 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409358" misc_feature 913..930 /gene="CG15312" /locus_tag="Dmel_CG15312" /gene_synonym="CT35293; Dmel\CG15312" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409358" ORIGIN 1 tcagtcgagc gacgcaactc gaacgcaacg gtacatgagt ggcggttggc gagcgaaccc 61 agtgtcccgt tatcaacaac aactctccaa acaccgaact gcagttgaat taagccacca 121 aatacttcgt gttttttttt tcaagttcca tagatgtagt acagtacgac agttactcaa 181 ttactcaatt gcaacttcca aagaattcgc gtagtgcgaa aatcgccaaa aatcagcagc 241 cgcactttga agttacgtca aaaggagtcg tgaaagagga agaacgagag tgagggagag 301 agagagaggt agcaagagag ccgtaagaaa ataacaacaa ggcagaagca cgcgatagga 361 gtaactgtaa atgtgagggg ataaaatagg agaaagtaga aatcagcaaa agaacttttc 421 gtattatttg ttgttgttgc tttctgtttg ttgtttttgg cgcgtcgtcg ccgtttgctt 481 ttttgttttt attagtttta tttgtttttc ctttccttta ttatttgtct tcgctgtgcc 541 tgtgcctttg ttgttgattg ctgtgcagcc ggctttggtc aaaagggagg gggtgataaa 601 gctagcagga agagcagcca aaggaggctt atgtaaagcg tgcttcgagc gtgctatgga 661 agcatgtcgt ccacttccag ctccgtgcta acgttgtcat cgtttaatct attatttttc 721 acccaagtgc tcacggtact cagctcgacg atcaagtaca acgaatacgc gacggacaag 781 ggcggcaatg tgagcatacc gtgcatagcc cagggaaaca taatgtgggt gaaagagcac 841 ggcaacaaca gcacgatagt tcagactggt cgtgttctcg tcctgcgaaa tgtgagcacc 901 acggatgcgg gaatctacgt atgctttgcg tcagtgccac gcccatcgac aacagcaaca 961 tcagcaacta cctcaccgca aaatctgcag gataaagaaa cgcggccact ggaggatgag 1021 gatgatggcc aaggggaaag cgtatccccc aaggatgacc agctgaagga agccgaaatg 1081 gaggaggaag tggagtatct agcccaccag cgaaccaagc tcatcgttcg cactgttccg 1141 ggtccagtgt cgcagctata cttcaaggca tccacaatac tgggtttcct catctggcgc 1201 ttcaataaga ctcaatccgg tggctatccg gtgcgcagct ttacggcgga gtaccgcaac 1261 gtctcctaca agacgccgcc ggcgaatgcc agtttcgagc acgcctggag caggatggat 1321 ccgatcaaca tagcctttaa tgtgcgccaa atggaggtct atcgcctggc acccaacacc 1381 acctatgagt ttcggatatg ggccaacaat gaactgggca gcggcgaggt ggtcaccacc 1441 aatgtgacca cgctgccgga gacaaaggag gaggcgagtc ggacggcgga ccagagcctg 1501 gtggccaagg tcatgggggc agtgctggcg atcaggatgc tggggaggat gacgatgacg 1561 atgtggccat gccatttccg cgcaccatca tctttggcca gcaccatcga acgcctccgc 1621 cgccgcgttt gcatttgcca ccgcagcacc accgccatca aaaccagagc caccaccatc 1681 agtatcatca tcagcagaac cagcagcagc accaccacca ccacctacgg cggcaggacg 1741 acgatgatga cgacgactac gaggaggagc acgaacccac catggagcgg ttcaagcgta 1801 aagtctccgt cttcttcacc ggacccacca tcaagcgtat ttgagacgta tttgagtaca 1861 aacactggtc accaaggttg ttgcattgct gcttgattgg atagttagga tccacctcta 1921 catcatatac atagatatag aaatgagaga gagcttatcg atcgatcgaa tgtttcgttt 1981 tcatttcggt ttcctgtcca agcttcaact atgaaatacc aaaaaaaaaa aaaaaaaaaa 2041 acaaagaacg ccacaaatcg ccagagattt tgatttagag ctcattgcat tgcttctatg 2101 ccccgaatca caactatata gtatatatac acgtattata aatataaacc aaaacaaata 2161 tattgctgtg atacaaattc aattgaacga acattgtaag gatttaccat aaagcacacg 2221 aaacaccaaa aacccagcta ttaaccatca tgaatttgct gaagctcgta gctataaagc 2281 tcatattgta ttttgtctag ttaaacacgc tatctgagtt acagccactg gattattcag 2341 atccacatat atagacgaca gaatttagcg gacaagttag cttagagcct caaaaatcgc 2401 ccaaaagaga tctgttacca agtactaatc aatataaatg tccttacacc cagtccgttt 2461 gtctgttagc ccgaactaat gcttttctgt aattgtaact gattttataa tatttaaaat 2521 taaattagtc aattgtaaca gatctctgat agtctctgat agataccgga ctatatcgtt 2581 tgaacttgtc cttgttttgg ttccgttgta aagatttaac aaactgtgaa acaattttat 2641 aattgagcaa atattttgca ctgtagagcg caccaaacga tctatatata gatatataaa 2701 tatatatata tatatatatt taaaaccgtg aaaaacgttt gataaacatt ttaaataaac 2761 ggcaaaatgc cttgtgcttt agttcggcct caaagctaaa taaattgatt atgatatgat 2821 ataggaatat ttattaacgt agttaaagta gcctgaaaac caaatattca aagaaatgaa 2881 aataaaaatt gcttccactc acagtaaaca aaatctaaac aatgaaattg ttataaaaga 2941 taaatcaaaa ctaattttaa acaagcgaat attgtgaata taccgaagca aaaaaaaaat 3001 atatatatat atagtgagaa cgatcacaaa atgtgtggaa tgtacataaa gatagcgagt 3061 gggtatctta agaaagactg tagttaatat ttaagacact ttggcctgcg cttttaccaa 3121 tatttttgtg gcccaacttg gcccgaactc cttggttcca acaatatttt gcattgatat 3181 gctagagcta ccaacaagta tatagtatta atatttctaa caattcggaa tgtgcactta 3241 actaagcgaa gattgaaact aaaaatcaga agatggaaac atcctattta aataggtgga 3301 agtttaaata agcaaaagtc tctcgcctaa gccctgatcc taaactcttg gctgtatttc 3361 taattgttat cgcttcatgt tgaggtttat tgttataacg ccagcctccc atgagcaata 3421 ctccccccaa attaccgtaa acaaattatt ttctaatctg agcccaagcc ataagtggag 3481 aagattagac ctcaacacca caaaaacacc g