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LOCUS NM_167145 2894 bp mRNA linear INV 26-DEC-2023 transcript variant A (UbcE2H), mRNA. ACCESSION NM_167145 VERSION NM_167145.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2894) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2894) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2894) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2894) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2894) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2894) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2894) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2894) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2894) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2894) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2894) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2894) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2894) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2894) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2894) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2894) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2894) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2894) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167145.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2894 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2894 /gene="UbcE2H" /locus_tag="Dmel_CG2257" /gene_synonym="CG2257; Dmel\CG2257; dUbc-E2H; Kdo; Ubc-2EH; Ubc-E2H; UBC-E2H; Ubc-E2Hs; UbcDE2H; ubcE2h" /note="Ubiquitin conjugating enzyme E2H" /map="7D6-7D6" /db_xref="FLYBASE:FBgn0029996" /db_xref="GeneID:31728" CDS 578..1129 /gene="UbcE2H" /locus_tag="Dmel_CG2257" /gene_synonym="CG2257; Dmel\CG2257; dUbc-E2H; Kdo; Ubc-2EH; Ubc-E2H; UBC-E2H; Ubc-E2Hs; UbcDE2H; ubcE2h" /EC_number="2.3.2.23" /note="CG2257 gene product from transcript CG2257-RA; CG2257-PA; UbcE2H-PA; marie kondo; Ubc-E2H" /codon_start=1 /product="ubiquitin conjugating enzyme E2H, isoform A" /protein_id="NP_727233.1" /db_xref="FLYBASE:FBpp0071067" /db_xref="GeneID:31728" /db_xref="FLYBASE:FBgn0029996" /translation="MSSPSAGKRRMDNDVIKLIESKHEVTILGGLNEFHVKFFGPTET PYEGGVWKVRVYLPDNYPFKSPSIGFVNKIYHPNIDESSGTVCLDVINQAWTALYDLS NIFESFLPQLLTYPNPVDPLNRDAAALYLHEPEEYHRKVADYVQRYATEDALRAAQQE RESSDSESSMSDYSEDEARDMEL" misc_feature 602..1012 /gene="UbcE2H" /locus_tag="Dmel_CG2257" /gene_synonym="CG2257; Dmel\CG2257; dUbc-E2H; Kdo; Ubc-2EH; Ubc-E2H; UBC-E2H; Ubc-E2Hs; UbcDE2H; ubcE2h" /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 H and related proteins; Region: UBCc_UBE2H; cd23797" /db_xref="CDD:467417" ORIGIN 1 gtcatcaatg gtcacactct gcaggcgctg gtcacactac aaattttcca agtctttcat 61 attccggaaa acaaaacaaa attaattaag taattagaca cgaagtatct aggaaaatgc 121 acagggaatc acggtgatta aacggaaatg tggagaagta tcgaagcgta agaatcgacg 181 gcgaccgtca gtccacaata acaccaccca cgagcaacaa taacaacaat acaactaaaa 241 cgggaggcaa ctgcaaatat acacacaccg agagaaatca aaataaaaag gcagctcccg 301 ttttgctctg gacggtgcca gtgagagttg acgaatgcgg agcagttcgt ggctggcgga 361 gcagcagctg ggcaaccgga agcggatagc ggatgtaact caatagcaat atttcaaagg 421 aacaacatta agcatacaac ttatagataa caaagataac accgccttag ccttagtgaa 481 aaacaacgag gagacgacca ctccaaaacc aaatcaaatc aaaccaaacc aatcaaatca 541 aaagccaggc aactacaatc ccaaataaac caacaaaatg tcctcgccca gtgccggaaa 601 gcgacgcatg gacaacgatg tgatcaagct gatcgaatca aagcacgagg tgaccatcct 661 gggaggcctc aacgagttcc acgtcaagtt cttcggtcca acggagacgc cctacgaggg 721 cggcgtgtgg aaggtgcgcg tctacctgcc cgacaactat cccttcaagt caccgagcat 781 tggttttgtg aacaagatct accatccgaa cattgacgaa tcctcgggta cggtgtgcct 841 ggatgttatc aatcaggcct ggacggcgtt gtacgatcta tcgaacatat ttgaatcgtt 901 cttgccgcag ctgctcacat atcccaatcc ggtcgatccg ctcaatcggg atgcggccgc 961 attgtacctg cacgagccgg aggagtatca tcgcaaggtg gccgactatg tgcagcgcta 1021 tgccaccgag gacgcgttgc gggcggcgca gcaggagcgg gagagcagcg acagcgagtc 1081 gagcatgtcc gactacagtg aggatgaggc cagggacatg gaattataat atcggttgga 1141 ccgccagcct acggaactac cgctaacact aacactgaca acagcctaat acaaatgctt 1201 cgagaatcca ttttcctgcc acccaatttc cccaaacaaa cacactcact tatactttca 1261 ccatacccct tcagttggcg atggaacaaa aagcaacaat atatatatat atatatctat 1321 atatatatat acataattga taaatgataa ttggatttta agatagaaag tgattcgatg 1381 atggcgtgtg atgatcagcg cacacacgca gatacatata aatatataca taatatatat 1441 atatatatac actaatgtaa gcagaaagaa aaacaagatt taaaaactct tagtttagcc 1501 atcagtagct gataacaaaa cggattggag caacgatcgc aacagatcat agcagatata 1561 tagaccacag taacaaaaaa aaaatggaac ggatggaaga gcaaaataga aacaaacaga 1621 atagaaacac aaacaaacaa acaaacaaaa ccgataaaat acagatagca gagataaaag 1681 catagatgca agcgcaattt aaatggttat agtaagtgca catgcaatgc gaaatttgac 1741 gagaaattgc tttggccttg atctggcatt aaacagactt cgatgctcgt cgttctttag 1801 agtttaacaa gttgatagaa aacgtaaaca caaataccac catcaaacat aagtttttgg 1861 aatgccctca ccacatataa ataccacacg acgataaccc aattatccaa tttgcaatcc 1921 agaggaacgg aaaccttaga acgatcgatc gatcagcaaa actgcggatt attatttgtt 1981 cttatgtaat agtgtgtact ttatatgttt gtcttgtttt tgttccgttt aattgtaagc 2041 gcgaattttt ttttattgtc tgtatatgtg tattaagata tttggaaacc gcagaaaatc 2101 atcagactta gcagcacttt ctctgccgaa aagtaaaaaa aatatatatc aaaaggtgaa 2161 tacgatcgat actaaatgaa atgaaataga aagccaagac aaatcctaga ggaaaggcat 2221 ggaggcgatt gcgtggaaca gacggaataa tcgttgcagt tctttttctt gttaattaat 2281 cttattatac ggttattatg taatatttta aaataggatt cgaattgatc gtgtaattaa 2341 atgcaataat tcttatgtct aacttatgtc acccgtgttt aagccaaaag catatatttt 2401 tttattataa tacattttgt ctttacacca catttactac atgatttatt gttctctctc 2461 tctctctctc tctctcttag tcatctctct ccctcgttct cgctttttaa aattgttaat 2521 caaattggag aaatggagaa ttggagaaca tccggtgggt tggaattttg atgaggatgt 2581 gatttttaga aggcgggttc ttaagtgaaa tcaaatgaaa gtgcagatat atagacatta 2641 gcgatctact gtactatgta ctaacactat aacaatactt atgcctaagt ctaacagcag 2701 aattaatgag taatctgata gttgtatata agtgacacac acacacacac tcaacataca 2761 tatataaata tatatatata tatatatgcc gatatctatc aggatacaca ataattaaaa 2821 cgtaattcaa gcaatcgaag tcagatggaa ataaaacccc atggacgaga gtgggacaaa 2881 aaatgagtaa aaat