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LOCUS NM_167117 3263 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_167117 VERSION NM_167117.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3263) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3263) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3263) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3263) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3263) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3263) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3263) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3263) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3263) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3263) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3263) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3263) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3263) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3263) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3263) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3263) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3263) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3263) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Nov 2, 2005 this sequence version replaced NM_167117.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3263 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3263 /gene="Sxl" /locus_tag="Dmel_CG43770" /old_locus_tag="Dmel_CG14425" /old_locus_tag="Dmel_CG18350" /gene_synonym="CG14425; CG18350; CG33070; CG43770; Dm-Sxl; Dmel\CG43770; DmSxl; dSXL; Fl; fs(1)K1274; fs(1)M106; l(1)6Fa; melSxl; Mex156; ORF2; Su(da); Sx1; sxl; SxL; SXL; Sxl-1 Sxl-2; Sxl-Pe; SxlPe; SxlPm" /note="Sex lethal" /map="6F3-6F5" /db_xref="FLYBASE:FBgn0264270" /db_xref="GeneID:3772180" CDS 426..572 /gene="Sxl" /locus_tag="Dmel_CG43770" /old_locus_tag="Dmel_CG14425" /old_locus_tag="Dmel_CG18350" /gene_synonym="CG14425; CG18350; CG33070; CG43770; Dm-Sxl; Dmel\CG43770; DmSxl; dSXL; Fl; fs(1)K1274; fs(1)M106; l(1)6Fa; melSxl; Mex156; ORF2; Su(da); Sx1; sxl; SxL; SXL; Sxl-1 Sxl-2; Sxl-Pe; SxlPe; SxlPm" /note="CG43770 gene product from transcript CG43770-RF; CG43770-PF; Sxl-PF; Sex-kethal; sex-lethal; Sex lethal; female lethal; sexlethal" /codon_start=1 /product="Sex lethal, isoform F" /protein_id="NP_727167.2" /db_xref="FLYBASE:FBpp0303691" /db_xref="GeneID:3772180" /db_xref="FLYBASE:FBgn0264270" /translation="MYGNNNPGSNNNNGGYPPYGYNNKSRHIFFHSPERSSHHYHRKA KDTH" ORIGIN 1 acactgcttt gttgttgccg aagaaggaaa gtcgcgcagt gaattttttt ctgcgcgcct 61 acaagaacag ctataataag cacacactta aaaaaaaccc cataggactt aagagaggaa 121 agcacagtga gcgtgcacac atgtaaaaag agaaagagag caacagcaat tttagtacaa 181 cacaagaaag ttgaacagag gcagaagaga agtaacagga aaacaataac aacgacagca 241 gcaggccagc tgagagcgct gagcgccaaa acaattgaag agatcgattg aatctcgatc 301 atcgttctta acctcaagtc aactgcaact cacctcatca tccttttcct gtaaaaccga 361 aactcacctt cgatcgaggg tgtaactttt gttgattcga aaaacacact cccaactctc 421 aggatatgta cggcaacaat aatccgggta gtaacaataa taatggtggt tatcccccat 481 atggctacaa caacaagtcg agacatattt tttttcacag cccagaaaga agcagccacc 541 attatcaccg aaaagcgaaa gacactcact gactcttaag atagtatgta gtttttattt 601 gcacgggggg gcaaacgcgc cagctccgcc ccccatggtc tcctcgccaa cgaaacgcaa 661 tgtttttgaa tcgaggacac ctccaaagcc cttggtgggc gtggatttgg gatgtcccat 721 tctctgccat ccggaatgga tacagaattt tcatttccaa gttcatcgtc gcgtcgtggt 781 tacaatgatt tccccggctg cggcggcagc ggcggaaatg gtgggagtgc caacaattta 841 gggggcggca acatgtgcca cctgccgccg atggccagca acaactcgct gaataatctc 901 tgcggattgt cgctgggcag cggtggtagt gatgatctca tgaacgatcc tcgggcaagc 961 aacaccaacc tgattgtcaa ctacttgccc caggacatga ccgatcgcga gctgtacgcc 1021 ctattcagag ccattggacc catcaacacg tgcagaatca tgcgagacta taagactggc 1081 tacagttttg gttatgcttt cgtggacttc acatcggaaa tggactcgca gcgtgctatt 1141 aaagtgctga atggcatcac agtgcgcaac aagcggctta aggtttccta tgcacgtccc 1201 ggcggagaat cgatcaagga caccaatctg tatgtgacca atctgccgcg taccataacc 1261 gacgatcagc tggacacgat cttcggcaag tacggttcca ttgtgcagaa gaacatcttg 1321 cgtgacaagc tcacaggtcg tcctcgtggt gtggcctttg ttcggtacaa caagcgtgag 1381 gaggcccagg aggccatttc ggcgctgaac aacgtaatac ccgagggcgg atcacagccg 1441 ctgtccgtcc ggttggctga ggagcatggc aaggcgaagg cggcccactt tatgtcgcag 1501 atgggcgtgg ttccagcaaa tgtaccaccg ccgccaccac aaccgccagc acatatggcc 1561 gccgcattca acatgatgca cagaggtaga tcaattaaat cacagcaacg cttccaaaac 1621 tcgcatccct atttcgatgc taaaaagttt atctgaaata caaatatcca gaaacgaata 1681 caagatgaaa cacacaagcc acacacaaaa tataatcaag agcgatctgc tgggtatata 1741 gtgaatacat atataccaat taatcttgag agtgtttaca tctgaaaccc ttgattcatt 1801 ttgtttcttt tggtatttca caaacaacaa caacaaaaca gcaggctacg aaaaacaatc 1861 caaccaacaa caaacataac actaacaacc aacaacaata tgaatgcata cttagtttta 1921 ttatttgctc ttaattcggt aattcgtaaa taattcaatt tattgttgca atttcgcagt 1981 gcatatatat tatactaata tatatgtcgt atattttgat aaaaaaaaaa aacacaaaaa 2041 ttgaattgta tttaaatttt ttagtgtaat tgaaaaatat aacaaaacta aaaaaaaaaa 2101 ttaaaaatca tttggaaaac gtaaaaaaaa gtaactttta gatactaacc tacaactaaa 2161 aagagaaagg gaaatatcac gttttttttg tttaggctta aatcttaagc ttttctttca 2221 caactttgac aacagaactc acaactacac acacacacat acacaaaacc aggcgaaacg 2281 gtaaactagc acttcaaagt tcgcgtaaaa gtgttagtca aaaaccattt ttttaaactt 2341 tttttttatg tgtgtgtttt ccaaagcgga aaattttttt ttcccggata cagcacaata 2401 acaaaacgta aagctgcaat tttttttata caaataaaaa ataccgaaat gcacataatg 2461 agtaatatat attaacaaca aagagataaa ccaaccaagg actgaatcga tacctaacta 2521 aaaaagcaag aaatgcataa cccactaaaa aagatgatat atatccttct tgaacgaagc 2581 taaagagtgc aatttttttt gatcctagtt attttttttg gtaatttttt tcccgtttac 2641 acaaaagact ggtgcgagac aacagaagat taaacaaaca ttgcaatcaa gcaatcagaa 2701 ctgaattata aaagtaaaac aaatcacgat ataaaataca aatctaaagg agtaaaaatt 2761 acaaaagcgt tgccgagcat taacctgtaa cccttttaga tccacttacc tcttcagcat 2821 cttcagatcg catcaataat attgaaatcg aatcacgcct ttttttttgg ttttaatttg 2881 cccatctcta ccagcgacaa caactacaat ctactgcaag ataaacaaca tgaaaaaaaa 2941 aacaagaaaa ctaaaatatt tctgtttttc aactgatatc ttctatcatc aagttttttc 3001 catatatcaa caaaaacgaa aaacacaaat aatttaaaaa aaaaaatccc ctttttagat 3061 atacttataa tatacatata tatttcacta tatggaacct attctataaa atagcgttaa 3121 attttaataa ttatttagtt tgtagtgcgt taaaagcatt tcaaaacaaa aatcaagtat 3181 ataaaacaaa atcccgaacg tgtgaccaga gaaactgaat ataataaatg gcgaaaagca 3241 aaacaaacat aaaaccaaaa acc