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LOCUS NM_167104 2758 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_167104 VERSION NM_167104.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2758) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2758) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2758) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2758) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2758) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2758) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2758) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2758) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2758) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2758) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2758) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2758) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2758) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2758) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2758) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2758) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2758) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2758) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_167104.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2758 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2758 /gene="Inx2" /locus_tag="Dmel_CG4590" /gene_synonym="CG4590; D-inx-2; Dm-inx; Dm-inx2; Dm-Inx2; Dmel\CG4590; FBpp0291074; inx-2; Inx-2; INX-2; inx2; Ix2; kropf; l(1)G0035; l(1)G0036; l(1)G0043; l(1)G0059; l(1)G0118; l(1)G0157; l(1)G0317; l(1)G0364; prp33" /note="Innexin 2" /map="6E4-6E4" /db_xref="FLYBASE:FBgn0027108" /db_xref="GeneID:31646" CDS 244..1347 /gene="Inx2" /locus_tag="Dmel_CG4590" /gene_synonym="CG4590; D-inx-2; Dm-inx; Dm-inx2; Dm-Inx2; Dmel\CG4590; FBpp0291074; inx-2; Inx-2; INX-2; inx2; Ix2; kropf; l(1)G0035; l(1)G0036; l(1)G0043; l(1)G0059; l(1)G0118; l(1)G0157; l(1)G0317; l(1)G0364; prp33" /note="CG4590 gene product from transcript CG4590-RB; CG4590-PB; Inx2-PB; pas related protein 33; innexin2; innexin 2; Innexin-2" /codon_start=1 /product="innexin 2, isoform B" /protein_id="NP_727150.1" /db_xref="FLYBASE:FBpp0070966" /db_xref="GeneID:31646" /db_xref="FLYBASE:FBgn0027108" /translation="MFDVFGSVKGLLKIDQVCIDNNVFRMHYKATVIILIAFSLLVTS RQYIGDPIDCIVDEIPLGVMDTYCWIYSTFTVPERLTGITGRDVVQPGVGSHVEGEDE VKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKMLVMDLNSPIVNDECKNDRKK ILVDYFIGNLNRHNFYAFRFFVCEALNFVNVIGQIYFVDFFLDGEFSTYGSDVLKFTE LEPDERIDPMARVFPKVTKCTFHKYGPSGSVQTHDGLCVLPLNIVNEKIYVFLWFWFI ILSIMSGISLIYRIAVVAGPKLRHLLLRARSRLAESEEVELVANKCNIGDWFLLYQLG KNIDPLIYKEVISDLSREMSGDEHSAHKRPFDA" misc_feature 244..1296 /gene="Inx2" /locus_tag="Dmel_CG4590" /gene_synonym="CG4590; D-inx-2; Dm-inx; Dm-inx2; Dm-Inx2; Dmel\CG4590; FBpp0291074; inx-2; Inx-2; INX-2; inx2; Ix2; kropf; l(1)G0035; l(1)G0036; l(1)G0043; l(1)G0059; l(1)G0118; l(1)G0157; l(1)G0317; l(1)G0364; prp33" /note="Region: Innexin; cl03000" /db_xref="CDD:470716" ORIGIN 1 aacagtttga attttctatc cgaagagtgc gcttagtgcc gctgctgcga cggcgtttag 61 acttccacct ggaaactgaa gagtaatggt ggccaacgag tgaggaaccc gaaagtcccg 121 tagcaaagtc accaggcagc cgatacgatc cgcaacagtc agcgttagtg tcaaggagta 181 gaaatatcct ccgtaacaaa gaatcctcgc aaatcgcata atatagagta gcagaccgac 241 aaaatgtttg atgtctttgg gtccgtcaag ggcctgctga agatcgacca ggtgtgcatc 301 gacaacaatg tctttcgcat gcactacaag gccacggtga tcatactgat cgccttctcc 361 ctcctggtga cctcgcgcca atacatcggt gaccccatcg attgtattgt ggacgagatc 421 ccactgggcg tgatggacac ctactgctgg atctactcta cgtttaccgt gccagagagg 481 ctaacgggca tcaccggacg cgatgtggtg cagcccggcg tgggctccca tgtggagggc 541 gaggacgagg tgaagtacca caagtactac cagtgggtgt gcttcgtcct cttcttccag 601 gccatcctgt tctacgtacc gcgctatctg tggaagtcct gggaaggcgg acgcctcaag 661 atgctggtca tggatctcaa cagccctatt gtgaacgatg agtgcaagaa cgatcgcaaa 721 aagatcctgg tcgactactt cattggcaac ctgaaccgcc acaatttcta cgccttccga 781 ttcttcgtgt gcgaagccct gaactttgtg aatgtgattg gacagatcta ctttgtggac 841 ttcttcctcg acggcgagtt cagcacctac ggcagtgatg tcttgaagtt cactgagctg 901 gagccggatg agcgcattga tcccatggcg cgggtctttc cgaaggtcac caaatgcacg 961 ttccacaaat acggtccatc cggcagtgtg cagacccacg acggtctgtg cgtgctgccc 1021 ctgaacattg tcaacgaaaa gatctacgtg ttcctgtggt tctggttcat catcctgagc 1081 atcatgtcgg gaatatcgct tatctacaga atcgctgttg tggcgggtcc caagctccgc 1141 catctcctac tccgagcccg ttcccgtttg gctgaaagcg aggaggtcga actggtggcc 1201 aacaagtgca acatcggcga ttggttcctg ctctatcagc tgggcaagaa catcgatccg 1261 ctcatctaca aggaggtgat ctcggacttg tcccgcgaaa tgagcggcga tgagcatagc 1321 gcccacaagc ggcccttcga cgcctaatta gtgggcgtgg ccgtgtgcca gagtgccatt 1381 tcacgcagcc gaaattgggt taagacgatg ataagacgat gtcggaaaat ggggaaatca 1441 gtaatcggaa ggcggaggga ggataaagga taaaggatta agtaaaccaa caatgtagat 1501 gaggcctttc gagctaatga cgagctaatg aacacatatc aacgaattcc atggtaaagg 1561 acaagatcgc aagcaatagc cgattttact gtttactgtt ttgcatcaac aacaagacac 1621 gtacaattgc aattaaaaat acaattacaa taatgtaacc aacaacaata atataacaaa 1681 taacagatac tagccgcagc cagaaacgtt agctaaaaga gtggattggt tttttttgga 1741 ttggattggt tcaacggttt caagacaatc aaattttcca tttgccaaaa ttaagaattt 1801 cccgactgga ccgaaaatcc cattgccaat ccattttaaa acattcctgg taatcttgaa 1861 agacagaaga aaagacattt acaaactata tattttttgt gcagcagcaa acaaattgag 1921 atatgataga tctatataca tccatatata tttttaataa gcaattacat atatatttat 1981 acataaatat acagacggac cgaaaagaaa tctatatatt tatgaatgcc acatgcgagt 2041 aacatttatg ctaagagttg tgatcattga ttaagacatc taaaaaaaaa atgcgaaaat 2101 acaaaaaaaa aaaagaagac aaaataaaca aaacaataat ttacacttag taaagaaaaa 2161 acgccagcat aataatacac attttatttc aatttttact cttttaattt agcaattttc 2221 gccagcaaat aataattaga attatgtaat tccctttttt tttgcatatc tttggtagca 2281 tttatttagt ttagcgcaat ttttttttaa cacacacccg aactcttcgt aaaagaagag 2341 caattaaatt tatacatata tatatattta tatatataaa tatataaaca tttatatata 2401 aatatatatt tatagacgta tatatttttg taaatgaaac tgcaagaagt atacatttag 2461 cttttaagcg taaaaatgga aaagaccaac aaaaatgaaa gactcaaaag caatatttaa 2521 tatttaaaag caatcgaaaa tcaaataaat gtgtttgtaa actttgtgtt tatcatcgac 2581 gcgataaacg agccaagcct aaaataagtt tcaatttcaa ttccatatac ttataactac 2641 ttacattaaa cgagaataaa aacacccaaa acatgatgat ctttaatatg atttattgtt 2701 tgtactcgag ccgaacaact tcatttcatg cgaaaataaa caagaaaata aaacaagg