Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_167085 3243 bp mRNA linear INV 26-DEC-2023 B (CG3168), mRNA. ACCESSION NM_167085 VERSION NM_167085.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3243) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3243) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3243) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3243) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3243) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3243) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3243) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3243) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3243) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3243) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3243) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3243) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3243) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3243) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3243) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3243) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3243) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3243) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167085.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3243 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3243 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /map="6C9-6C10" /db_xref="FLYBASE:FBgn0029896" /db_xref="GeneID:31612" CDS 268..2166 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="CG3168 gene product from transcript CG3168-RB; CG3168-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_727116.1" /db_xref="FLYBASE:FBpp0070946" /db_xref="GeneID:31612" /db_xref="FLYBASE:FBgn0029896" /translation="MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAP ATGNATSHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAPDG GHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLAICGLV STSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKK VLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGS MLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLL FYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKN KYSRMISGMVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALPANLLAILG MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEV FPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLP NTTRKELN" misc_feature <676..2145 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="synaptic vesicle protein SV2; Region: synapt_SV2; TIGR01299" /db_xref="CDD:130366" ORIGIN 1 gctcagatac tttccaccgc ttgaagtgca cgaacgttga tcgaaatacc gctcacagta 61 ccgccgacgt accgcttaac cgctcgcaaa atcgcattta ccaaagattc gcagagaata 121 gcaacaagaa accgctaagc gaggcagaca caactgtacc catctaagca gagcttagag 181 caaaaagcca acaaaaaacc ccgacaagta aacccaattt cctttttgct acgcgcacaa 241 gaagccaaca aaaccctgaa ctatagaatg gtagaaggtg attccgcaaa gggcaaaagc 301 gaattctata atgtagaagc tggactacaa ccgaactaca accagagcgc agcaagcaac 361 caagcaagca accatcccac tggccaggcc aacgcaccag ccaccggaaa cgcgacttcg 421 cacatcgaca accgagcgat catccagccg tactccttgg gcaccggacc caagcagccg 481 gagtatcaat ttgcggcgga caatcgcggc tacgagccgg acagccatgc caatggcaag 541 cagcaggacg tagagcggga cgcccccgat gggggtcacg ggggtcacgg gccgcccggc 601 aaggggggca agggtggtaa gggacgcaag aagtccgtac ccttgccgga acccactgcc 661 ccaatagtcg ccaatttcga gagggccatc gaattgtgcg gctatggcaa gttccattat 721 atactgctgg ccatctgcgg attggtcagc acgtccgagg aaatggatgt catatccatg 781 tccttcattc tgccatcggc ggagtgtgac ctggatttga atacggagac caagggctgg 841 ctgaactcga tcatcttcat cggcatgatg gtgggcgctt acttctgggg cagcatcgcc 901 gatagctttg gccgcaagaa ggtcctcatc gtcatctcgt tcatgaacgc cttctgcatc 961 gttgcgtcgt ccttctcgca gacatactcg ttcttcatgc tgttccgctt cctcaatggt 1021 gcagctttgg gcggcagtgg tcctgtgatc tggtcgtact tcgccgaatt ccagcccaag 1081 gcgaagcgcg gctccatgct gagcttcatg gccgccttct ggacgtttgg caatctgttc 1141 gtggccagct tggcctggct gatcatcccg cgaacgattg gcttcaccac gccgtacttc 1201 acatacaact cgtggcgtat ctttctgctg gtctgctcac tgccctcgtt cctcgtggga 1261 ttccttctct tctatctgcc cgaatcgccc aagtttctgc tgacgcgcgg caagaaggat 1321 cgcgctctgg ccattttccg tggcattttc gtaacgaaca cgaaacgccg tccggacgag 1381 tacatggtct acgacctgga agtggacgag aagctgctgg agagcaatgg caatgtgaag 1441 aacaaatata gccgcatgat cagcggaatg gttgaccaca gtcgcgccct gttcaagtcg 1501 cccatactgc gtttcactat cgtttcgatt acgatcaact ttacattcca cattggctac 1561 tatggcctgt tgatgtggtt cccggagctc ttcaatcgct tcgaggagta cgagaaggca 1621 ttcccagatc agtcggccgg cgtttgtgct gtcacagact atgtggtcaa cctggccaag 1681 gagcaaagca acaatggtac ctgctcatcg gatataccgc aatcggtgtt catggaatcg 1741 ctgatatcac tagcctcagc gctgccggcc aatctgctgg ccattctggg catggacatg 1801 ctgggcagga agttcttcct aatcgccggt accatgaccg ccggcatctg ctcggcgttg 1861 atgtactttg tgcgcagctc cgttcagaac ctggtcgtat cggccatttt cagtggtgcc 1921 atttcggcgg ccaatgcagc gctcgactgc ctcatcaccg aagtattccc caccaagctg 1981 agagccaccg gcgtggccat ttcaatggtg gccgctcgct tgggcggcat cattggcaac 2041 atcgtgattg cccagctgct ggacaactac tgtccatcgc ccacgttcat cgtgtcgggt 2101 ctgctcatcg gcggcggtct catgtgcctc ctgttgccca atacgacgcg caaggaactc 2161 aattaagcag ctaatcaatt cccaacgata gccaaccagc caaaaaaaaa acaccccata 2221 gaatcttctg ctttaactgc tagtctgcaa ggtcttgttt cgagtcatga tactatggtt 2281 tataatggat catagatatt aacttcaggt caagaccttt ttgggctaga taagttcccc 2341 tttgaacaat caacaatagt taacacaccg cccaaaaaac cacccgcgac ccacaagtaa 2401 tttccatttg ccccattccg ccagaggatc gggcattatc tgtgtatata tggtatgtgt 2461 gtgctacaat acacgattat ttgtatcgtc agtaattatt taacgatagc gataacgatt 2521 ttcattgtgt gtctaatttt aaacgaccct ttaccccctt tactccccct ttccctaccc 2581 actacaaata tctatcaatc tattggaatt taaatgaacc aacaaaatga aatcagaaat 2641 gggcgaaaga aaagtcacaa cgagaacaaa ccttatcaca aggaaaataa gaaaatttgg 2701 aaactaatac atacaaccat tttggaatgc ggattggcat tctttcgccc aattatgata 2761 agcaaagaaa accccaagcc agcgagaaga tatagcaggt aggatcgata gcaatcgatg 2821 tatatgtatt gtattgtacg atatgtagag aataatatat atatatttgg caagcgccgg 2881 cgccggctga agcagcagca gagggactga gtaacggtaa cggtaaagat aaggggctaa 2941 gcgccggata atcaaatgga atcaaagata ctatcgcacc gttctcgttc cgctgctgtc 3001 cgttattgtt gttattattg ctattattat taatgcattc aatgtaaaac acatacgtat 3061 ataactttat ctatatatta aacatacata ctatatcaaa aagatatttt ttttttgttt 3121 ttttttcgtc atgtaggacc aaagcacagg aagtgaaaga atatttttaa aatttagtta 3181 cgttataaca agttacgcta catatataca aaacaaaaac cctaataaaa aaggacaaac 3241 cac