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LOCUS NM_167063 2201 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_167063 VERSION NM_167063.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2201) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2201) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2201) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2201) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2201) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2201) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2201) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2201) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2201) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2201) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2201) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2201) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2201) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2201) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2201) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2201) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2201) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2201) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167063.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2201 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2201 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /map="5E3-5E4" /db_xref="FLYBASE:FBgn0040918" /db_xref="GeneID:50392" CDS 352..1554 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /EC_number="2.3.1.24" /note="CG3576 gene product from transcript CG3576-RA; CG3576-PA; schlank-PA; longevity assurance gene 1; Psc" /codon_start=1 /product="schlank, isoform A" /protein_id="NP_727075.1" /db_xref="FLYBASE:FBpp0070898" /db_xref="GeneID:50392" /db_xref="FLYBASE:FBgn0040918" /translation="MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLI WPIPFAAVVMLVRYTLERFWISPVGKSLGIRSSRPKKAANVPILEKTYAKSTRLDKKK LVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSFIFGVIVLWDK PWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDVKRKDFWQMFIHHMV TLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQKLCDAIFAIFTVVWI VTRLGFYPRIIYSSSVEAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQ KGLMSGDIRSSDSEDLTDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAGSRAGARV ATTERREE" misc_feature 574..744 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(574..585,589..591,640..642,658..660,697..699, 703..708,715..720,724..732,736..741) /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(577..579,586..588,706..708,715..720,727..729) /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 754..1353 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC; smart00724" /db_xref="CDD:214789" ORIGIN 1 tgcagttaca tttactgctc cgccgtctct gggcacactg tattgttgtt gctcgacgag 61 gaaatactat tagtattttt tttcgttcat cctgaaagtt taagtggacg aaacgagcgg 121 cggccgactc gacaccgagc cgaaattcag aaagtctatt gctttggtcg agaacagatt 181 gtcagggaac ttcacttcat ttacgctccc aaacaaacgg caaagaaaaa gcaaagcata 241 tacatatgtg acaacaaacg ccaaggaaaa actggaaagc taagcaaagg aaaaccaaga 301 aaaagaaaac aaacaattga gaaattaaga agcggcaact gaagcagcaa catggacata 361 ttgaatgagt tcagcaatgt attctggagt acgcacattt ggctgccgcc gaacacaacc 421 tgggcggaca ttgcgcccgg ctcgcgtcca gatgtggtgc acgccaacta caaggacctc 481 atatggccca ttccattcgc cgctgttgtc atgctggtcc gctacacgct ggagcgtttc 541 tggatatcgc ccgtaggcaa atcacttggc atacgtagtt ctaggcctaa gaaagcggca 601 aatgttccta ttctggagaa gacctatgcc aaatcgacgc gattggacaa gaaaaagctg 661 gttccgctgt ccaagcagac ggatatgagc gagcgcgaaa tcgagcgctg gtggcgtcta 721 cgcagggccc aggataaacc gtcaacgctg gtgaagttct gcgagaacac gtggcgttgc 781 atctactatc tgtacagctt catctttggc gtgatcgtgc tgtgggacaa gccctggttt 841 tgggatgtga agagctgctg gtacggctac ccgcatcagt cgatcagcaa tgatatctgg 901 tggtactaca tgatttcgat gtccttctac tggtcactca ctggcaccca gttcttcgat 961 gtgaaacgca aggacttctg gcagatgttc atccatcaca tggtcaccct gctcctaatg 1021 tcgctcagct gggtgtgcaa tctgcatcgc gtcggttcgc tcgtcctagt cgttcacgat 1081 tgtgctgaca tcttcttgga ggccgccaaa ctcaccaaat atgccaaata tcagaagctc 1141 tgcgatgcaa tctttgccat cttcacagtg gtgtggattg ttacgcgtct gggcttctat 1201 ccacgcatca tttatagctc atccgtggaa gcaccgcgca ttctgcccat gttcccagcc 1261 tactacatct tcaactcact gcttctgatg ctgctcgtcc tgcacgtcat ctggacatac 1321 atgatcctca agattgttgt cgactctctg cagaagggtc tgatgtccgg tgacatacgt 1381 tccagtgata gtgaggatct cacagacagt tcggggaatg cacgtctgac caatggctcg 1441 gcgcgctcca agaacaagtc gatcagcagt gcgccatcgg ataaaggatc tgccggagga 1501 gcaggatcaa gagcaggagc aagagttgcg acaacggaac ggagagagga gtagctgaga 1561 caccagtacc actagtaggg gccacacttc ccgggagcag gcgcagcaac aacagcaaac 1621 aaacaaaatc cacacacacc ccaaaaaagc acacaccacg aacacacaca ccacacacac 1681 tcacgcacac agacgcatac aaaaaaacca aaccagttca gaatgttttt atgttattat 1741 ttttttttat atatacatct tttttaaggt aaacaaaaaa gaaagaaaca aatcgaaaac 1801 caaaagaaat ttaaataaat gcgagaaaat tgatgcgtaa cgattcgctt gtacatcgtt 1861 attgattaaa actattacta ttactattac tattactata tgcctcacag tttttttttt 1921 gttgttgttt gtcttgctta accaaaaaaa aaaaaaacaa aagcaaaagc aaagagacga 1981 aggagaaaat aacgttaaat ataaccattt aaacgtaaag ctaaagttaa gttattttac 2041 caaacgaaat ggaagttagc acagtgggac taaaccaaaa tcgcttaggc aagaattcaa 2101 tagacgaaga gtaaaaaatg aatagtagtc aaaactattg taaatactgt acttgtatgt 2161 ttcccatatt aataaattta tgctaaacaa attacaagac c