Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_167019 1992 bp mRNA linear INV 26-DEC-2023 transcript variant B (Pdha), mRNA. ACCESSION NM_167019 VERSION NM_167019.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1992) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1992) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1992) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1992) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1992) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1992) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1992) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1992) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1992) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1992) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1992) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1992) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1992) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1992) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1992) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1992) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1992) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1992) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167019.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1992 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1992 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="Pyruvate dehydrogenase E1 alpha subunit" /map="4C14-4C14" /db_xref="FLYBASE:FBgn0028325" /db_xref="GeneID:31406" CDS 653..1639 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /EC_number="1.2.4.-" /EC_number="1.2.4.1" /note="CG7010 gene product from transcript CG7010-RB; CG7010-PB; Pdha-PB; l(1)G0334; PDH complex; pyruvate dehydrogenase; lethal (1) G0334" /codon_start=1 /product="pyruvate dehydrogenase E1 alpha subunit, isoform B" /protein_id="NP_726947.1" /db_xref="FLYBASE:FBpp0070678" /db_xref="GeneID:31406" /db_xref="FLYBASE:FBgn0028325" /translation="MQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDV DNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIVGA QVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLPVIFVCENNNY GMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINYVNTHGPLVMETNT YRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLITTDEVKAIDLKVRK EVDEATAFAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQERKGVNH" misc_feature 653..1585 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629" /db_xref="CDD:470272" misc_feature order(713..715,869..871,944..949,1040..1042,1046..1057, 1064..1066,1076..1078,1088..1090,1133..1144,1184..1186, 1334..1336,1346..1348) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(803..808,944..946,950..952,1034..1045,1124..1126, 1130..1132,1322..1324) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:238958" misc_feature order(929..931,935..937,941..943,956..958,965..970, 977..982,986..991,998..1000,1055..1060,1076..1081, 1088..1090) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(1307..1327,1331..1363,1388..1396) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:238958" ORIGIN 1 caaacggttg ttatagttgt gcaatatagt agttgataaa ctaatctcgc tacctttttt 61 tccgattgtt taacttacaa cgacgcgcgg cggtgcgact gagacaccag atatatagcg 121 tgcgattcta gatccggaca atccgcatat agaaagcccc cattcacatc caatttctgt 181 cagtcgaacg agaataacac agcgaaaatg ttgcgtactc tgtcacgcgt tagcgaattg 241 cccattattg ttaagcaact gcaaaaagta cgtaatccca atcccgcttt gcacccacta 301 acatttctaa ttgttgtcac taaaaatgca attgaacaaa tccattcgat aatgaaaaca 361 ctaaaagcgt tgccataaca acaacaacaa caacatcatc atcagcggat gtcggatact 421 tagcaacaac aacaacaaca gcagcatcga tatcatcagg aatgggagat attcatcgtc 481 gtttttcggt ttattccaga atgcagccca agcaggtgtt tcgaaaacca acaattatgc 541 cacggaggcc accgttcaag tgaatcggcc cttcaagctg caccgcctgg acgaaggacc 601 cgccacggaa gtgaagctga ccaaggatca ggccctcaag tactacacac agatgcagac 661 gatccgtcgg ttggagacgg ccgccggtaa tctgtacaag gagaagatca ttcgcggctt 721 ctgtcatctg tattccggcc aggaggcatg cgccgttggc atgaaggcgg cgatgcggga 781 tgtggacaac atcatctcgg cgtaccgtgt ccacggatgg acctacctga tgggcgtctc 841 acccagcggc gtactggctg agctcaccgg tgtccagggt ggctgtgccc gcggcaaggg 901 tggctccatg cacatgtacg caccgaactt ctacggaggc aatggcatcg tgggtgctca 961 agttcctttg ggtgccggcg ttggcttggc ctgcaagtac aagggcaatg gcggcatgtg 1021 cctggccctc tacggtgatg gtgccgccaa tcaaggacag gtgttcgagg cttacaacat 1081 ggcctacctg tggaaactgc ctgtgatctt tgtctgcgag aacaacaact acggaatggg 1141 caccagttct gagcgtgctt cctgcaacac tgattactat acccgcggcg acgctctgcc 1201 cggaatctgg gtggacggca tggatgtgct ggccgtgcgc agcgccaccg agttcgccat 1261 caactatgtg aacactcacg gacctttggt gatggagacg aacacgtacc gatactctgg 1321 acactccatg tccgatccgg gcacatcgta ccgcacacgc gaggagatcc aggaggtgcg 1381 ccagaagcgt gatcccatca cctccttcaa ggagctgtgc atcgagctgg gtctgattac 1441 caccgatgaa gttaaggcca tcgatctgaa ggtacgcaag gaggtcgacg aggccaccgc 1501 cttcgccaag tccgatgccg agctgggcgt gagccacctc tggacggacg tgtactccaa 1561 caatctggag cccaagctgc gcggcaccat cgcctacgat attgatcaca tccaggagcg 1621 caagggcgtc aatcactaag tcatcgggcc aacgaatctg attcgggaac tcacaagaac 1681 cttaaacgaa acaagaaaac cgaacagcaa acacaaatca ctgacagaca gacaagaaga 1741 cacaataact cagaaacttg gacacaagcg aaatctctag atcataagcc gaaagttgaa 1801 cgatgagaac cccgtagaac ggaacggatc cgaagagacc cacaaaaagc ttagctaatc 1861 ggagcactcc aaccacacat cgtagcgcac cacataactc tggggtactg cattggatat 1921 tatattgcga acgtgttcaa taaggataaa gcgaggtgta aattgttgaa aatataaaaa 1981 tctagaaaaa tt