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LOCUS NM_167018 1667 bp mRNA linear INV 26-DEC-2023 transcript variant D (Pdha), mRNA. ACCESSION NM_167018 VERSION NM_167018.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1667) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1667) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1667) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1667) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1667) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1667) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1667) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1667) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1667) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1667) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1667) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1667) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1667) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1667) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1667) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1667) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1667) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1667) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_167018.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1667 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1667 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="Pyruvate dehydrogenase E1 alpha subunit" /map="4C14-4C14" /db_xref="FLYBASE:FBgn0028325" /db_xref="GeneID:31406" CDS 115..1314 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /EC_number="1.2.4.-" /EC_number="1.2.4.1" /note="CG7010 gene product from transcript CG7010-RD; CG7010-PD; Pdha-PD; l(1)G0334; PDH complex; pyruvate dehydrogenase; lethal (1) G0334" /codon_start=1 /product="pyruvate dehydrogenase E1 alpha subunit, isoform D" /protein_id="NP_726946.1" /db_xref="FLYBASE:FBpp0070677" /db_xref="GeneID:31406" /db_xref="FLYBASE:FBgn0028325" /translation="MLRTLSRVSELPIIVKQLQKNAAQAGVSKTNNYATEATVQVNRP FKLHRLDEGPATEVKLTKDQALKYYTQMQTIRRLETAAGNLYKEKIIRGFCHLYSGQE ACAVGMKAAMRDVDNIISAYRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMY APNFYGGNGIVGAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLW KLPVIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATEFAINY VNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPITSFKELCIELGLIT TDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDVYSNNLEPKLRGTIAYDIDHIQ ERKGVNH" misc_feature 214..1260 /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629" /db_xref="CDD:470272" misc_feature order(388..390,544..546,619..624,715..717,721..732, 739..741,751..753,763..765,808..819,859..861,1009..1011, 1021..1023) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(478..483,619..621,625..627,709..720,799..801, 805..807,997..999) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="TPP-binding site [chemical binding]; other site" /db_xref="CDD:238958" misc_feature order(604..606,610..612,616..618,631..633,640..645, 652..657,661..666,673..675,730..735,751..756,763..765) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:238958" misc_feature order(982..1002,1006..1038,1063..1071) /gene="Pdha" /locus_tag="Dmel_CG7010" /gene_synonym="CG 7010; CG7010; Dmel\CG7010; E1-PDH; l (1) G0334; l(1)G0334; L(1)g0334; L(1)G0334; Pdh; PDH; PDH-E1; pdha; PDHA1; PDHalpha; Pdha[KK101856]; PDHE1" /note="phosphorylation loop region [posttranslational modification]" /db_xref="CDD:238958" ORIGIN 1 cactaatagg ccaagtgata tatagcgtgc gattctagat ccggacaatc cgcatataga 61 aagcccccat tcacatccaa tttctgtcag tcgaacgaga ataacacagc gaaaatgttg 121 cgtactctgt cacgcgttag cgaattgccc attattgtta agcaactgca aaaaaatgca 181 gcccaagcag gtgtttcgaa aaccaacaat tatgccacgg aggccaccgt tcaagtgaat 241 cggcccttca agctgcaccg cctggacgaa ggacccgcca cggaagtgaa gctgaccaag 301 gatcaggccc tcaagtacta cacacagatg cagacgatcc gtcggttgga gacggccgcc 361 ggtaatctgt acaaggagaa gatcattcgc ggcttctgtc atctgtattc cggccaggag 421 gcatgcgccg ttggcatgaa ggcggcgatg cgggatgtgg acaacatcat ctcggcgtac 481 cgtgtccacg gatggaccta cctgatgggc gtctcaccca gcggcgtact ggctgagctc 541 accggtgtcc agggtggctg tgcccgcggc aagggtggct ccatgcacat gtacgcaccg 601 aacttctacg gaggcaatgg catcgtgggt gctcaagttc ctttgggtgc cggcgttggc 661 ttggcctgca agtacaaggg caatggcggc atgtgcctgg ccctctacgg tgatggtgcc 721 gccaatcaag gacaggtgtt cgaggcttac aacatggcct acctgtggaa actgcctgtg 781 atctttgtct gcgagaacaa caactacgga atgggcacca gttctgagcg tgcttcctgc 841 aacactgatt actatacccg cggcgacgct ctgcccggaa tctgggtgga cggcatggat 901 gtgctggccg tgcgcagcgc caccgagttc gccatcaact atgtgaacac tcacggacct 961 ttggtgatgg agacgaacac gtaccgatac tctggacact ccatgtccga tccgggcaca 1021 tcgtaccgca cacgcgagga gatccaggag gtgcgccaga agcgtgatcc catcacctcc 1081 ttcaaggagc tgtgcatcga gctgggtctg attaccaccg atgaagttaa ggccatcgat 1141 ctgaaggtac gcaaggaggt cgacgaggcc accgccttcg ccaagtccga tgccgagctg 1201 ggcgtgagcc acctctggac ggacgtgtac tccaacaatc tggagcccaa gctgcgcggc 1261 accatcgcct acgatattga tcacatccag gagcgcaagg gcgtcaatca ctaagtcatc 1321 gggccaacga atctgattcg ggaactcaca agaaccttaa acgaaacaag aaaaccgaac 1381 agcaaacaca aatcactgac agacagacaa gaagacacaa taactcagaa acttggacac 1441 aagcgaaatc tctagatcat aagccgaaag ttgaacgatg agaaccccgt agaacggaac 1501 ggatccgaag agacccacaa aaagcttagc taatcggagc actccaacca cacatcgtag 1561 cgcaccacat aactctgggg tactgcattg gatattatat tgcgaacgtg ttcaataagg 1621 ataaagcgag gtgtaaattg ttgaaaatat aaaaatctag aaaaatt