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LOCUS NM_167012 3017 bp mRNA linear INV 26-DEC-2023 variant A, mRNA. ACCESSION NM_167012 VERSION NM_167012.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3017) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3017) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3017) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3017) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3017) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3017) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3017) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3017) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3017) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3017) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3017) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3017) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3017) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3017) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3017) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3017) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3017) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3017) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_167012.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3017 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3017 /gene="Cbp80" /locus_tag="Dmel_CG7035" /gene_synonym="cbp80; CBP80; CG7035; Dmel\CG7035; EG:84H4.3" /note="cap binding protein 80" /map="4C11-4C11" /db_xref="FLYBASE:FBgn0022942" /db_xref="GeneID:44409" CDS 316..2718 /gene="Cbp80" /locus_tag="Dmel_CG7035" /gene_synonym="cbp80; CBP80; CG7035; Dmel\CG7035; EG:84H4.3" /note="CG7035 gene product from transcript CG7035-RA; CG7035-PA; Cbp80-PA; Cap-binding protein 80; Cap binding protein 80" /codon_start=1 /product="cap binding protein 80, isoform A" /protein_id="NP_726938.1" /db_xref="FLYBASE:FBpp0070651" /db_xref="GeneID:44409" /db_xref="FLYBASE:FBgn0022942" /translation="MSRRRAHDTEDEGYDHRRNKRRRVSENQEIEDRLESLILRVGER STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYK FGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQLLDTMIDVSN EDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALR VWSSDAPHPQEEYLDCLWAQIRKLRQDNWAEKHIPRPYLVFDSILCEALQHNLPTIVP PPHHDNFEYPMPWVVYRMFDYTDCPDGPNLPGAHSIERFLIEEHLHHIIETYHHERKD CAAQLLSFPYKHKIPLEYCIVEVVFAELFHMPTPRYLDICYGSILIELCKLQPATLPQ VLAQATEILFMRIDSMNTSCFDRFVNWFSYHLSNFKFTWSWDEWDSCLLLDGEHPRPK FIQEVLQKCLRLSYHQRITEMMPTTYAKLIPLTPVPNYKYANEEAANLPGTTVAHQLV VAIRQKCTPEEVVNILKDIPNSGYSGEEMSDGSFNALKIDVFVQTLLNLGSKSFSHSF AAISKFHSVFRALAETEEAQICILHNIFELWSSHQQMMVVLIDKLLKLQIVDCSAVAT WIFSKEMTGEFTKLYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKADSSSSDSEDD SSHKRKKPITHADKPSEEVVERMEEKLEAANVNQKRLFLIVFQRFIMILSEHLLRSDT DGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVFQQFVAL RA" misc_feature 406..1044 /gene="Cbp80" /locus_tag="Dmel_CG7035" /gene_synonym="cbp80; CBP80; CG7035; Dmel\CG7035; EG:84H4.3" /note="Middle domain of eukaryotic initiation factor 4G (eIF4G); Region: MIF4G; smart00543" /db_xref="CDD:214713" misc_feature 1234..1734 /gene="Cbp80" /locus_tag="Dmel_CG7035" /gene_synonym="cbp80; CBP80; CG7035; Dmel\CG7035; EG:84H4.3" /note="MIF4G like; Region: MIF4G_like; pfam09088" /db_xref="CDD:370287" misc_feature 1777..2625 /gene="Cbp80" /locus_tag="Dmel_CG7035" /gene_synonym="cbp80; CBP80; CG7035; Dmel\CG7035; EG:84H4.3" /note="MIF4G like; Region: MIF4G_like_2; pfam09090" /db_xref="CDD:462675" ORIGIN 1 gctgttatcg ataaaccctg ccatcgatgg cggcacatct ttagttcttt ggcaaaaaaa 61 aaaaatagca tcgcatcgcg ttttttgtga aaattgtgac aaagctgttt tgaaagttgg 121 caagctaatt gacgctcgca gtgaaatact agacgcacca acaaggccca tccgtcaagc 181 gtatcctgtc caggatcccc gaaaaagtcc aggtccaaga ggtgtaccca tcagcgtgct 241 tttctgtctg ccggtggcca aggaccaatc ggtaatcggt gttttccgca aaattcacag 301 aaaattcacg ggaagatgag tcgcaggagg gctcacgaca cggaggatga gggctatgat 361 catcggcgca acaagcgtag acgtgtgtcc gaaaaccagg agatcgagga tcgtctggag 421 tcgctgatac tgcgggtggg cgagcgtagc acctcctccg tggaatcgaa cctagaggga 481 ctcgtctccg ttctggaggc cgatctgggc acgtttcgcc tgaagatcct gcgcatcctg 541 tccgactgcg ccgtgcgaat gccagagaag tgtaccgttt acaccacgtt ggtgggcctg 601 ctcaatgcca agaactacaa gtttggcggc gagttcgtgg atcacatggt gaagaccttc 661 aaggagtccc tcaagatgtg ccgctgggat gccgcccgct actcgctgcg ctttctggcc 721 gacctggtca attgccacgt catttcggcc accagtctcc tccagctgct ggacaccatg 781 atcgatgtct ccaacgagga tacagtgccc caggtgcgtc gcgattggtt cgtctttgct 841 gtgctctcca cgctaccctg ggtgggtcgc gatctctacg agaagaagga gtctgccctg 901 gagtccctgt tgcttaggat cgaggtctat ctaaacaaac gctcaaagaa gcaccataat 961 gcgctgaggg tgtggtcctc agacgctccg catccacagg aggagtactt ggactgcctg 1021 tgggcgcaga tacgcaagtt gcggcaggac aattgggcgg agaagcatat accacgaccc 1081 tatctcgtat tcgattcaat actttgcgag gcactgcagc acaatctgcc cacgattgtg 1141 ccgccgccgc atcacgacaa ctttgagtat cccatgccct gggtggtgta ccgcatgttc 1201 gactacaccg actgccccga tgggcccaat ctgccgggtg cccactcaat agagcgcttt 1261 ttgattgagg agcatctaca ccatatcatt gaaacatacc atcacgagcg aaaggattgc 1321 gccgcccagc tgcttagctt tccgtacaag cacaagatcc cgctggagta ctgcatcgtc 1381 gaggtggtct tcgccgagct ctttcatatg cccacgccgc gctatctgga catctgctac 1441 ggctccattt tgatcgaact ctgcaaactg cagccggcca cgctgcccca ggttctggcc 1501 caggccaccg agatcctctt tatgcgcatc gactcgatga acacgtcatg tttcgatcgg 1561 ttcgtcaatt ggttctccta tcatctgagc aacttcaagt tcacatggtc atgggacgaa 1621 tgggacagct gtctgctcct cgacggcgag catccgcgtc ccaaattcat ccaggaggtg 1681 ttgcagaagt gcctacgcct ttcgtatcat cagcgcatta cggaaatgat gccaacgact 1741 tatgccaagt tgattccctt gacgccagtg cccaattaca agtacgccaa cgaggaggca 1801 gccaacttgc cgggaacaac ggtggcccat caactggtgg tggccatccg gcagaagtgc 1861 acgcccgagg aggtggtcaa catattgaag gatataccga atagcggata tagcggcgag 1921 gagatgtccg acggcagctt caatgctttg aagatcgatg ttttcgtcca gacgttgctg 1981 aatttgggct cgaaatcgtt ttcgcacagc tttgcggcca tatcgaaatt ccattcggta 2041 ttccgtgcac tggccgaaac ggaggaggcg cagatctgca ttctgcacaa cattttcgaa 2101 ctgtggtcct cgcaccagca aatgatggtg gtcctaatcg acaagctgct caaactgcaa 2161 atcgtcgatt gttcggcggt ggccacgtgg attttctcca aggagatgac cggcgagttc 2221 acgaaactgt atctctggga aattctccat ctgacgatca agaagatgaa caagcacgtg 2281 atcaagctga ataccgaatt gagcgaggcc aaggagaagc ttgcgaaggc ggactcttcg 2341 tccagcgatt cggaggatga ttcttcgcat aaaaggaaga agccgatcac acacgctgac 2401 aagccatccg aggaggtggt tgagcgcatg gaggagaaat tggaagcagc gaatgtgaac 2461 cagaagcgtc tgttcctcat cgtcttccag agattcatta tgatactctc cgagcatctg 2521 ctgcgctccg atacggacgg ccgtgatcca gacacggatt ggtatcgctg gacaatcgga 2581 cgactgcagc aggtcttcct tatgcatcat gagcaagttc agaaatacag cagcactttg 2641 gaaacgctgc tattcacatc cgacctggac acacacatct tggaagtgtt ccaacagttt 2701 gtggccctgc gtgcctaaag atggagctga gaaggcgcag cccaaaatac cccccccatt 2761 ttacatatat cgatgatgaa tttgagtttg taaagttcgc ccagttagat cgaactgtcg 2821 acatatgatt tcgggaaatt agccgttgca tacccatgca ccaccataca agaaaaacac 2881 actagataag gaataatttt tttatgtttt gtaaacgacg cgaaaagtta acaacaggaa 2941 tgagaaaagc tcagaaaaat aaagtcgaat aggcagtttc tttataagga taaagaccaa 3001 gatggacatc aaaatac