Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_166998 3306 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166998 VERSION NM_166998.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3306) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3306) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3306) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3306) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3306) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3306) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3306) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3306) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3306) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3306) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3306) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3306) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3306) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3306) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3306) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3306) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3306) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3306) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166998.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3306 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3306 /gene="Gem4c" /locus_tag="Dmel_CG32783" /gene_synonym="CG32783; Dmel\CG32783" /note="Gemin 4c" /map="3F9-3F9" /db_xref="FLYBASE:FBgn0052783" /db_xref="GeneID:318207" CDS 214..2949 /gene="Gem4c" /locus_tag="Dmel_CG32783" /gene_synonym="CG32783; Dmel\CG32783" /note="CG32783 gene product from transcript CG32783-RB; CG32783-PB; Gem4c-PB; Gemin4c" /codon_start=1 /product="gemin 4c" /protein_id="NP_726901.2" /db_xref="FLYBASE:FBpp0311142" /db_xref="GeneID:318207" /db_xref="FLYBASE:FBgn0052783" /translation="MITAEKHPLDNCQLFVQLKKIFHDNNEQAKCLKDMIYWSGNDEH IEKICDQVTDLLEEHDLIIQPPDTMDPFAMNQLRGLLVYLVLNTAHDYFLCKSQWSAN VMHLCNQLPPIPLFLTIAIAVNCCLMEPLEEFLACGPRWLTIQYFEAFNEALSVINSD CVETLPLLSAALRAAGRAIVNCNLPAENKQLLRQIACMEHRHILDSKQRLHTLPRPST RKIYLAKAMDHLIEVLLYTLNDPLKREKPNCFAVYSQITEDISDSNSSDPMPDLRHFA QILLDVLRRIFQLVSVDTYMYWHEMKSKSALYNCQELICRQTAELLKVLQSDNMLGEH PVCKQMQSFADAAKTLEQRVAEMRMGELLVFLDSGMATDEELLAGLDNLFSRFIAFGN DECVETMANHLIMLTKKHAQIILSFLGQVVESEMVVEDEGISVTEVNQGDDEDETSSN DDYEELLSLVLRPLFMQLNVEDKMEVLLLRDEQNVTQGFNFKAPDHRERRIRFFNQLD YNKRFPITKFLVLCFENARQTWIDFSHLGVTHTRFSKLFWHIAQSCPKHAAFHISACA DNILVNEQLLQKPYALQFTLYLYGHRQILNGLYTSARQLCVSLKDGRCPYGEDELRQA QNRFLDACAYGLAKFIEPMNLPSLQLILKLLKQISLGESNLITRGTAELNALEKEHPK LENGDDAPAVKVAKHYTYLNASLPEWRLKHWKLISHVMKTIDALRWDLATFEDFRVDN LELAVWYWQDGLSHLTFLGTECRQRILNQVNSLKHKGFWLIYLKEDTLKDTRSFLKLL TQSSAQEANDLFKKLLKKRADCAVMGDLSDAVVKVNSESAFMAFRFLFREYLIAFRSH AKHNKTITKRQHWDHLMAVVAKAPFSIRNEIMKLASKAFAVRFGINIQEQQAAKC" ORIGIN 1 tcatattagt atctatctac atcagagagt ctattacaaa gcgaaatttt ttgttgtagg 61 gacattttca ttttcaaaaa atattccttg cacgcaagat aatcggtacg caccggtaaa 121 ctatcgattt tcgatagtca tctgacagaa gacgcacata aaattgaatt ccttcggaag 181 agttttgacg aaacgcgaaa tttcggcagc acgatgataa ctgctgagaa gcacccgctg 241 gacaattgcc agttgtttgt ccagctgaag aaaatattcc atgacaacaa cgaacaggcc 301 aagtgtctga aagatatgat ttactggagt ggaaacgatg agcacattga gaagatctgc 361 gaccaagtga cggacctgct ggaggagcac gatctaatca tacagccgcc agacacaatg 421 gatccttttg ctatgaatca actgcgtgga ctactggtgt acctggtgct gaacaccgca 481 cacgactatt tcttgtgcaa atcgcagtgg agcgccaatg tcatgcattt gtgtaaccag 541 cttccgccta tcccactgtt cttgaccatc gcaatagccg ttaactgctg tctcatggag 601 ccgctggagg aattccttgc ttgtggaccc cgctggctga ccatccagta ttttgaggca 661 ttcaatgagg ctctgtcggt cattaattca gattgcgtgg aaacactacc gctgctctct 721 gccgccctca gagcagccgg tcgcgcaatt gtcaactgca atttgcccgc agaaaataag 781 caactgctgc gccagatagc ctgcatggaa catcgtcata tcttggactc taaacagcgc 841 ctccatacgc tgccgcgtcc atccactcga aagatttacc tggccaaggc tatggatcac 901 cttatagaag tccttttgta taccctcaat gatccattaa agcgggagaa accaaattgc 961 ttcgccgtct acagccaaat aaccgaggac atcagtgaca gcaactcaag cgatcccatg 1021 cctgatctgc ggcatttcgc ccaaatactg ctagacgttc tgcggcgtat ctttcagctc 1081 gttagcgtag acacgtatat gtattggcat gaaatgaaat cgaaaagtgc tttgtataac 1141 tgccaggagc taatctgtag acagacggca gaattgctta aagtactcca atcagataat 1201 atgctcggag agcatccggt ttgcaagcag atgcagagct ttgcggatgc agcaaaaaca 1261 ttggagcagc gcgttgccga gatgagaatg ggtgaactct tagtctttct cgattccggt 1321 atggccaccg atgaggagtt gctcgccggg ctggacaatc tctttagccg cttcatagcc 1381 tttggtaacg atgagtgcgt ggaaacgatg gcaaatcatt taattatgct caccaagaaa 1441 catgcccaga taatactcag tttcctgggt caggtggtgg agtccgaaat ggtggtcgag 1501 gacgagggca tatccgttac ggaagtaaat cagggggatg acgaggacga gacctcgtcc 1561 aacgatgatt acgaagagct gctaagccta gtactgcgtc ccttatttat gcaattaaat 1621 gtcgaggaca agatggaagt actgctattg cgcgatgagc aaaacgttac ccaaggattt 1681 aatttcaagg ctcccgatca tcgggagcgt cgcatacgct tctttaatca attggattat 1741 aataagcgct tcccgataac caaatttcta gtactgtgct ttgagaacgc aagacagacc 1801 tggattgatt tctcccactt gggcgtgacg catactcgct tctcgaagct attctggcac 1861 atagctcagt cttgtcccaa gcatgctgct tttcatattt ccgcctgtgc cgataacatc 1921 ttggtgaacg agcaactact tcaaaagccg tatgccttgc agtttacact ctacctatat 1981 ggccaccgac agatcctcaa cggtctctac acgtcagcgc gacaactgtg cgttagtttg 2041 aaagacggac ggtgtcccta cggagaggat gagcttaggc aggcgcaaaa taggttccta 2101 gacgcgtgtg cctacggttt ggccaagttt atagagccca tgaacttgcc cagcttgcag 2161 ttaatcttga aactgctcaa gcagattagt ctgggtgaaa gcaatctaat cacccgaggc 2221 actgcagagt taaatgcact cgaaaaggag cacccgaaat tggagaacgg agacgatgca 2281 ccagctgtca aggtggccaa gcactacaca tatctgaatg ccagcttgcc agagtggcgt 2341 ttgaaacact ggaagctgat ctcgcatgtc atgaaaacca ttgatgccct acgctgggac 2401 ttggccacct ttgaagattt ccgggtggat aatttagaac tggcggtgtg gtattggcag 2461 gacggtctgt ctcatctgac attcctaggc actgaatgcc gccagaggat cttgaaccaa 2521 gtgaacagtt taaagcacaa gggcttttgg ctcatctacc ttaaagaaga caccttaaag 2581 gacacacgct cctttctcaa attgctaact cagtccagtg cacaggaggc taacgatctc 2641 ttcaaaaagc tccttaaaaa aagggccgat tgtgctgtta tgggcgatct tagcgatgca 2701 gtggtcaagg tgaacagcga gtccgctttc atggccttta gattcctatt tcgagaatat 2761 ttgatcgcct tccggagcca cgccaaacac aataagacca tcacgaagcg ccagcattgg 2821 gatcatttga tggccgttgt ggccaaggct ccattctcca ttcgcaacga gattatgaag 2881 ctagctagta aagccttcgc tgtgcgattc ggcataaata tccaggaaca gcaggcggcc 2941 aagtgttaag gagatgctgt tagaagtgta attttcttaa gccaaatcga aactccgccg 3001 cttgtccaac actttaattc ttaggcagtc agatctctat atgactaaaa acatatataa 3061 tattcataac gctaggattg aacatcagaa taatttgata tcagattatt ttacaacttt 3121 gtatgtcctt taaaaggacg actgtatgca cataacaaat gtaccactac catgcaaatt 3181 ttttgtctta ctaaaaatac tttggcaagc aagtgaagtt attcagctga aaattaataa 3241 aattttgcat gttctttttt ttcgtattat tatgtattat atatataata tacaaaacgc 3301 tatgat