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LOCUS NM_166991 3007 bp mRNA linear INV 26-DEC-2023 variant C, mRNA. ACCESSION NM_166991 VERSION NM_166991.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3007) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3007) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3007) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3007) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3007) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3007) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3007) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3007) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3007) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3007) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3007) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3007) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3007) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3007) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3007) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3007) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3007) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3007) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_166991.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3007 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3007 /gene="fd3F" /locus_tag="Dmel_CG44123" /old_locus_tag="Dmel_CG12632" /old_locus_tag="Dmel_CG32779" /gene_synonym="CG12632; CG15238; CG18771; CG32779; CG44123; Dmel\CG44123; fd3f; Fd3F; FoxT" /note="forkhead domain 3F" /map="3F2-3F2" /db_xref="FLYBASE:FBgn0264954" /db_xref="GeneID:31336" CDS 242..2476 /gene="fd3F" /locus_tag="Dmel_CG44123" /old_locus_tag="Dmel_CG12632" /old_locus_tag="Dmel_CG32779" /gene_synonym="CG12632; CG15238; CG18771; CG32779; CG44123; Dmel\CG44123; fd3f; Fd3F; FoxT" /note="CG44123 gene product from transcript CG44123-RC; CG44123-PC; fd3F-PC; forkhead domain 3F" /codon_start=1 /product="forkhead domain 3F, isoform C" /protein_id="NP_726889.3" /db_xref="FLYBASE:FBpp0307179" /db_xref="GeneID:31336" /db_xref="FLYBASE:FBgn0264954" /translation="MIVNMPVNGTGSASSPTSNPSSNNNNNSSTTNQNDTNTNLPGDY NFLKRKFDDQEDLALGHDYEPIGANPWKKRHLDYDAGDLHFHLQLEQPPSNPPTNAAP AQSSTSFINDLFSYESSLLVPAVAYSHCPPSSAPLDDNGGWTGGELLELDHRYNSGLQ AELGQLNATLPPPPPTSSSAQNASNHTQQSTQQNVSPGQNPHQNQHFLVPQKQRIQSA GRRTSSGSVSGANEATEADFEDKNLSWLLNFKFDEFPHLSPHNQIHGQAVNLPEGSAP PHPPSTAVPIATSPCSSSSPSSASAASASASAISTNQSLGSGLVDQRARSPKSCSSAA MPAALGGGGNGSAGASAAGGVAGVGSTKTGRKFEELVMEVTSELDGNDMIVAEHVVVE DTSSKAPKKPPFTYTELIEYALEDKGELTVSGIYQWISDRFPYYKSNDDRWKNSVRHN LSINPHFRKGVKAPQGAGHLWAISSGDSAENVLAWEHKKQRLDLFFKMESINRERIQQ HQQQQQLQQHQQQHQQHSPQQKQHSAAQQQHMPQASSCMYDEAAVAVATLTQEMMQTN SGGGSTETSQQQQQQQQHHHHHSHQNHQNHNQHHQRLLPFNDLLSDDELRKTAGQILN GIHREVEVQSVNSIISTYHDVLLDNDYLNPIHKDVVVTESVLRQQHGTNLGGGNNNQN NQMGGNSHMGGGNSQYYITEIDPMELGIQMSHQVEPSEEEVLFSDEFNLNYFGYNPGS DIVA" misc_feature 1442..1660 /gene="fd3F" /locus_tag="Dmel_CG44123" /old_locus_tag="Dmel_CG12632" /old_locus_tag="Dmel_CG32779" /gene_synonym="CG12632; CG15238; CG18771; CG32779; CG44123; Dmel\CG44123; fd3f; Fd3F; FoxT" /note="Forkhead domain; Region: Forkhead; pfam00250" /db_xref="CDD:459732" ORIGIN 1 gcattccgtg gccagtcgca gcgcgagacg gttagccagt tagccagtgc ggaccgacta 61 attcccaatt tccgctcttg actaaactaa agattgagaa ataaagaaag aaatatcctt 121 cgtccgtccc ccagacgaag caggtcaatt tttttttcgt gttacttgct ctttttcgcc 181 aagtgtgagt tgtgtgtttt ggcttggcta acgtgattga aatcgagaca gccgggacat 241 catgattgtc aacatgcccg tcaatggaac gggcagtgca tccagcccaa catcgaatcc 301 cagcagcaac aacaacaaca atagcagtac caccaatcaa aatgatacga acactaatct 361 tcccggtgat tacaactttc ttaagcgcaa gttcgacgat caggaggatt tggctttggg 421 ccacgactac gagcccatcg gggcaaatcc ctggaagaag cgacacttgg actacgatgc 481 cggggacctg cacttccacc tgcagctgga acagccacct agtaatccgc caaccaacgc 541 tgcacccgcc caatcctcga cgtccttcat caacgatctc ttttcctatg agagcagtct 601 tctggtgccc gccgtcgcct attcgcactg tccaccatcg agtgctccat tggatgacaa 661 tggtggttgg accggtggcg agctgctgga gctggatcat cgttataact ccggcctgca 721 ggcggaactg gggcaattga atgccacttt gccgccgcca ccaccaacat catcatcagc 781 tcaaaatgca tccaatcata cgcagcagtc aacacaacag aatgtcagtc ctggtcagaa 841 cccacatcag aatcaacatt ttctggtgcc gcagaagcag cggatacagt cggcgggccg 901 acgcacctca tccggttcgg ttagtggggc caatgaagcc accgaggcgg acttcgagga 961 taagaacctc tcgtggctgc tcaactttaa gttcgacgag ttcccgcacc tatcgccgca 1021 caatcagatt cacggacagg cggtcaatct gccggagggc agtgctccac ctcatccacc 1081 atcgacggca gtgccgatcg ccacgtcgcc ctgcagttcc tcctcgccat catccgcctc 1141 cgccgcatcg gcatccgcat ccgccataag cacaaatcaa tctctcggat cgggtttggt 1201 ggatcaacgg gccagatcgc ccaagagttg ctccagtgca gcgatgccag cggcattagg 1261 aggaggaggc aacggctccg ctggcgcttc agcagcgggg ggcgtggccg gcgtgggctc 1321 caccaagact gggcgcaagt tcgaggagct ggtgatggag gtcacctcgg agttggacgg 1381 taacgacatg atagttgccg agcacgttgt cgtcgaggat acttcgtcca aggcgccaaa 1441 gaaaccaccg ttcacctaca cggagctcat cgaatacgcc ctcgaggata agggtgagct 1501 gactgtgtcg ggcatatacc aatggatatc cgatcgtttc ccctactaca agtcgaatga 1561 tgaccgctgg aagaactccg ttcgacataa tctatcgatt aacccacatt ttcggaaggg 1621 agttaaagcg ccccaaggag ccggtcacct gtgggccatt tccagcggag attccgccga 1681 gaatgttctg gcctgggagc ataagaagca gcggctggat ttgttcttca aaatggagtc 1741 gattaaccgt gagcgtatac agcagcatca gcaacagcag caactgcagc agcatcagca 1801 gcaacaccag cagcactcgc cgcagcagaa acaacattcg gcggcacagc agcaacatat 1861 gccacaggcc agtagctgca tgtacgatga ggcggcggtg gcagttgcta ctctcaccca 1921 ggaaatgatg cagactaaca gcggcggtgg cagcactgag acaagccagc agcagcagca 1981 gcagcagcag catcaccacc accacagcca ccagaatcac caaaatcaca atcaacacca 2041 ccaaagactg ctgcccttca acgatctgtt gagcgacgat gagctgcgaa agacggcggg 2101 tcaaatactg aatggcatcc atcgcgaggt ggaagtacag tcggtcaact ctatcatcag 2161 cacctaccac gatgtcctgt tggataatga ctatttgaat cccatacaca aggacgtggt 2221 tgttacggaa agtgtcctac ggcagcagca tggcaccaac ttgggcggag gcaataacaa 2281 ccaaaataac caaatgggcg gcaatagcca catgggtggc ggcaactcgc agtactacat 2341 caccgaaatt gatcccatgg agctcggcat tcagatgtcg caccaagtgg agccctccga 2401 ggaggaagta ctcttcagcg acgagttcaa ccttaactac tttggctata atccgggtag 2461 cgatatcgtc gcttgaccgc gcagacaaca gactccagtt tcagctcctc cagctcccgc 2521 tcagccaagc aattgaatta cccatatata tatatatata tatatatata tatacatata 2581 tgcatacttg tatatatatt gctcgatctt gctccattcc atgacaacaa tcgtaattgt 2641 agccgatcta ctcataagcc aactctaaac aaatactagt cacacttgaa caacacttac 2701 atgtaaccac ctaaatcaaa ccctacttac cgtttaccat ttagaccata tgtatagtct 2761 agtcttcagt gtaccaaaaa cacacctaat ccttattttt ttttgtctat actttagttg 2821 aatatttagc cgataagtag ctttctagcc ctaagtactt attcgtatat ctgctcaagt 2881 atctatttgc agagattaca tacatagatc ttgctcctct tcgaatttag ttaagtgttt 2941 ttacatgtag ctgaatattc gtgaatacta ccaggcagaa tgatatccac tccactaaga 3001 tgttaac