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LOCUS NM_166989 2065 bp mRNA linear INV 26-DEC-2023 (HIP-R), transcript variant B, mRNA. ACCESSION NM_166989 VERSION NM_166989.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2065) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2065) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2065) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2065) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2065) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2065) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2065) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2065) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2065) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2065) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2065) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2065) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2065) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2065) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2065) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2065) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2065) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2065) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_166989.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2065 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2065 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Hsc/Hsp70-interacting protein related" /map="3F1-3F1" /db_xref="FLYBASE:FBgn0029676" /db_xref="GeneID:31335" CDS 123..1256 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="CG2947 gene product from transcript CG2947-RB; CG2947-PB; HIP-R-PB; anon-fast-evolving-1A9" /codon_start=1 /product="Hsc/Hsp70-interacting protein related, isoform B" /protein_id="NP_726886.1" /db_xref="FLYBASE:FBpp0070572" /db_xref="GeneID:31335" /db_xref="FLYBASE:FBgn0029676" /translation="MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGG TVPPGQFNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGVIE ADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGNA LFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLR QACKLDFDEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEKH NASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYN LIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDGLD" misc_feature 150..263 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; Region: Hip_N; cd14438" /db_xref="CDD:271228" misc_feature order(150..152,156..164,168..173,180..185,201..203, 213..215,222..227,231..239,243..263) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:271228" misc_feature 498..584 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(501..503,510..515,522..527,531..533,603..605, 612..617,624..629,633..638,705..707,714..719,726..731, 738..740) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature <537..929 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; Region: NlpI; COG4785" /db_xref="CDD:443815" misc_feature 597..689 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 702..788 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1017..1130 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Heat shock chaperonin-binding motif; Region: STI1; smart00727" /db_xref="CDD:128966" ORIGIN 1 tgcataccaa tcgatagggc agagcaaaag tggacgtaaa gctaagcaaa tattgcttat 61 taataatatt aatatattaa tatatcagat ctgaaaacat cgagacaaaa cggaattcag 121 aaatggcttt cacaatgcaa accggggatc tgaagaagct gaagtacttc atcgactttg 181 cgcttgagaa tcccaccttc ttgaacatgc cgcagctgca gttcgtcaaa gatttcgtgg 241 agaagtttgg tggcacggtg ccgcctggcc aattcaacgg tggcagcgcc ggaggcaagt 301 gcccattcgg cggtgttgct ggtgccaagg ccaacgagcc ggccaatgcc cccgaggata 361 gcgaggacga aaagtccctc tccgatcctg agtcggacgt ggagctggac atggagggtg 421 tgatcgaggc ggacagcgac cccgcccaac ccatgggcaa ctacagcaag aaggccaccg 481 aagaggaggt ggagcaggcg agcgagctgc gcgcccaggc ggcctccgct tacggccagc 541 agaagttcga cgaggccatc gccttgtaca ccaaggccat tgaactgagc ccgggtaatg 601 cccttttcca cgctaagcgt ggtcaggcct tcctcaagct gaagaagccg aatgcctgca 661 ttcgggactg cgacgtggcg ctggaactca actcggattt ggcggctggc tacaagttca 721 ggggacgcgc ccgtcgcctc ctcggagatt ttgagctggc tgcccatgat ttgcgccaag 781 catgcaagct ggactttgac gaggagacag acgagtggct aaaggaggtc actccgaatg 841 ccaagaaaat cgagcagcat cgcttgaagc aggagcgtcg ccaggcagag cgtaagatca 901 aggaacgcca gcgggatcag aggcgcgcac gtaaggagca ggaaaagcac aatgccagct 961 ctggtggatc atctggagaa ttttccggtg ggaatcctgg taacggaaat atgtctgata 1021 tactgggcgc catgtcagat cccgaggtgt cagccgccat tcaggacatt ttgtcaaatc 1081 cgggtaacat cacaaagtac gcgtcgaacc cgaagatata caaccttatc aagaagattg 1141 tgcccggtgg agatgtgggt gctgcctttg gccaagcggg tgaaaaggct ggaaagccga 1201 gcgagcctaa gcctaaaaag gactccgccg acttcgtcga tgacggtttg gactaaggtt 1261 tagaaatggg gcagtagtaa gactgaaaca tgcgtcgata aaaagaagtt aacaaccaat 1321 tacacgaaat cgagcgagat tacaaaacaa caaagaaaga gaaagcaaca gagtgcggtg 1381 aagaagatgg actacacgaa aaacaaaagg gaaagcggct gccttacaca tttttgcagc 1441 tgagaaaaaa caaacatttc ctaagcttta acttaaccaa cacgtaaaag aacgggcgac 1501 aatggagaaa attcaaatat tcaaaatact acaagcagtc agaagaataa gcaacattta 1561 tttaaatcga gaagaaagag atgttggaga tgctggagac gcttcttcac atattattga 1621 aaagcatact tgcggccatt aaagtggcaa atgaaactat acaaaggagc tagaatatgc 1681 ttaaaaactt atcacatttg cagttcacag gtaaatcaaa agattgtcct gtgacgaaca 1741 aaacataaat gtttagacgt caagtcagat tcaagggtgc cgatcgatct agttgaacta 1801 aagctcgaga aacaaccaaa agaaaataaa aaatatatat atgttcaata atattagcct 1861 aaattaccga gaacgaagaa acggataaaa ctaatcgcat catttggtca aacaaaattg 1921 tactgagtag gatttaaatc atattgtaag caaatgcatt tagcccccca acatgaaagc 1981 aatcgcccat tcattcacac actcattcac acactcattc aaccagtgat caatggaaat 2041 aaataaacga atcaacaaga acccg