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LOCUS NM_166988 2085 bp mRNA linear INV 26-DEC-2023 (HIP-R), transcript variant A, mRNA. ACCESSION NM_166988 VERSION NM_166988.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2085) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2085) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2085) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2085) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2085) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2085) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2085) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2085) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2085) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2085) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2085) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2085) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2085) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2085) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2085) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2085) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2085) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2085) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 26, 2009 this sequence version replaced NM_166988.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2085 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2085 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Hsc/Hsp70-interacting protein related" /map="3F1-3F1" /db_xref="FLYBASE:FBgn0029676" /db_xref="GeneID:31335" CDS 143..1276 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="CG2947 gene product from transcript CG2947-RA; CG2947-PA; HIP-R-PA; anon-fast-evolving-1A9" /codon_start=1 /product="Hsc/Hsp70-interacting protein related, isoform A" /protein_id="NP_726885.1" /db_xref="FLYBASE:FBpp0070573" /db_xref="GeneID:31335" /db_xref="FLYBASE:FBgn0029676" /translation="MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGG TVPPGQFNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGVIE ADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGNA LFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLR QACKLDFDEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEKH NASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYN LIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDGLD" misc_feature 170..283 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; Region: Hip_N; cd14438" /db_xref="CDD:271228" misc_feature order(170..172,176..184,188..193,200..205,221..223, 233..235,242..247,251..259,263..283) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:271228" misc_feature 518..604 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(521..523,530..535,542..547,551..553,623..625, 632..637,644..649,653..658,725..727,734..739,746..751, 758..760) /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature <557..949 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; Region: NlpI; COG4785" /db_xref="CDD:443815" misc_feature 617..709 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 722..808 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1037..1150 /gene="HIP-R" /locus_tag="Dmel_CG2947" /gene_synonym="anon-EST:fe1A9; CG2947; Dmel\CG2947; Hip" /note="Heat shock chaperonin-binding motif; Region: STI1; smart00727" /db_xref="CDD:128966" ORIGIN 1 aaaatactga aaaatacaag agcgaagcga taaataccgt cgattaattc tcagtacttt 61 ttcatggtat ttatgcatac caatcgatag ggcagagcaa aagtggacat ctgaaaacat 121 cgagacaaaa cggaattcag aaatggcttt cacaatgcaa accggggatc tgaagaagct 181 gaagtacttc atcgactttg cgcttgagaa tcccaccttc ttgaacatgc cgcagctgca 241 gttcgtcaaa gatttcgtgg agaagtttgg tggcacggtg ccgcctggcc aattcaacgg 301 tggcagcgcc ggaggcaagt gcccattcgg cggtgttgct ggtgccaagg ccaacgagcc 361 ggccaatgcc cccgaggata gcgaggacga aaagtccctc tccgatcctg agtcggacgt 421 ggagctggac atggagggtg tgatcgaggc ggacagcgac cccgcccaac ccatgggcaa 481 ctacagcaag aaggccaccg aagaggaggt ggagcaggcg agcgagctgc gcgcccaggc 541 ggcctccgct tacggccagc agaagttcga cgaggccatc gccttgtaca ccaaggccat 601 tgaactgagc ccgggtaatg cccttttcca cgctaagcgt ggtcaggcct tcctcaagct 661 gaagaagccg aatgcctgca ttcgggactg cgacgtggcg ctggaactca actcggattt 721 ggcggctggc tacaagttca ggggacgcgc ccgtcgcctc ctcggagatt ttgagctggc 781 tgcccatgat ttgcgccaag catgcaagct ggactttgac gaggagacag acgagtggct 841 aaaggaggtc actccgaatg ccaagaaaat cgagcagcat cgcttgaagc aggagcgtcg 901 ccaggcagag cgtaagatca aggaacgcca gcgggatcag aggcgcgcac gtaaggagca 961 ggaaaagcac aatgccagct ctggtggatc atctggagaa ttttccggtg ggaatcctgg 1021 taacggaaat atgtctgata tactgggcgc catgtcagat cccgaggtgt cagccgccat 1081 tcaggacatt ttgtcaaatc cgggtaacat cacaaagtac gcgtcgaacc cgaagatata 1141 caaccttatc aagaagattg tgcccggtgg agatgtgggt gctgcctttg gccaagcggg 1201 tgaaaaggct ggaaagccga gcgagcctaa gcctaaaaag gactccgccg acttcgtcga 1261 tgacggtttg gactaaggtt tagaaatggg gcagtagtaa gactgaaaca tgcgtcgata 1321 aaaagaagtt aacaaccaat tacacgaaat cgagcgagat tacaaaacaa caaagaaaga 1381 gaaagcaaca gagtgcggtg aagaagatgg actacacgaa aaacaaaagg gaaagcggct 1441 gccttacaca tttttgcagc tgagaaaaaa caaacatttc ctaagcttta acttaaccaa 1501 cacgtaaaag aacgggcgac aatggagaaa attcaaatat tcaaaatact acaagcagtc 1561 agaagaataa gcaacattta tttaaatcga gaagaaagag atgttggaga tgctggagac 1621 gcttcttcac atattattga aaagcatact tgcggccatt aaagtggcaa atgaaactat 1681 acaaaggagc tagaatatgc ttaaaaactt atcacatttg cagttcacag gtaaatcaaa 1741 agattgtcct gtgacgaaca aaacataaat gtttagacgt caagtcagat tcaagggtgc 1801 cgatcgatct agttgaacta aagctcgaga aacaaccaaa agaaaataaa aaatatatat 1861 atgttcaata atattagcct aaattaccga gaacgaagaa acggataaaa ctaatcgcat 1921 catttggtca aacaaaattg tactgagtag gatttaaatc atattgtaag caaatgcatt 1981 tagcccccca acatgaaagc aatcgcccat tcattcacac actcattcac acactcattc 2041 aaccagtgat caatggaaat aaataaacga atcaacaaga acccg