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LOCUS NM_166984 2581 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166984 VERSION NM_166984.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2581) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2581) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2581) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2581) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2581) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2581) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2581) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2581) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2581) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2581) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2581) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2581) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2581) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2581) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2581) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2581) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2581) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2581) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166984.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2581 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2581 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /map="3E2-3E5" /db_xref="FLYBASE:FBgn0023215" /db_xref="GeneID:31331" CDS 794..2542 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="CG13316 gene product from transcript CG13316-RC; CG13316-PC; Mnt-PC" /codon_start=1 /product="Mnt, isoform C" /protein_id="NP_726880.1" /db_xref="FLYBASE:FBpp0070553" /db_xref="GeneID:31331" /db_xref="FLYBASE:FBgn0023215" /translation="MSGIGGIGVLLEAAQFLEQHEKLPQAGGGGGSALGVGVALPQQQ QQTVHCKSNSIINNNNSSQHNRNSSSSSNGIIATPPFTNGNGNGTVGVGNASAIFNVS VNANGNGLSNGHSSPRSQLAAAATAHDYEYSAAGVANGHSEGRPHVSAARDQQDHPQH QQHANHMQIQQHYGYMRSNIGGVIYGLHKDSADSAASSACGAGAGAAAVGMSIASSAP AAGSQLSAHHHTGHGGRRRTTSSNSNGAGTREVHNKLEKERRAQLKECYDLLKKVLPM GDEDRKKTSNLTILDTAHKYVNSLSHEVCEQEAKIEKLAKQKIELQKRLKQLSLRRES PPTDQQIIPQADKAVCLATTATTAPPTAASGHNGTTILFDAGNACATGQLTTVINKTN GGATAAASSKHNGNHTGGATTTLTPAMGIMTIKNGNGSNGNMLAISPTGGHNHQLHQH HNGSPAGSPSGIGATTGATITRGSPTPSTPSPSPSSSSSGVSLSTSFMGGSSSSSSSS SSSSSSSSSSSSSSPTQQQQIITPTATARSVGLKFHGGAGAAVPAGGGSVNGFHQADK DRNYTFLRLSAGTTAQ" misc_feature 1532..1768 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain found in Max-binding protein Mnt and similar proteins; Region: bHLHzip_Mnt; cd11402" /db_xref="CDD:381408" misc_feature order(1547..1552,1559..1564,1568..1573,1583..1585, 1643..1651) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:381408" misc_feature order(1580..1585,1589..1606,1610..1615,1652..1654, 1661..1663,1673..1675,1679..1687,1691..1696,1700..1705, 1712..1714,1724..1726,1733..1738,1742..1747,1754..1759, 1763..1768) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:381408" misc_feature order(1580..1582,1589..1594,1598..1603,1610..1615, 1652..1654,1661..1663,1673..1675,1679..1687,1691..1696, 1700..1705,1712..1714,1724..1726,1733..1738,1742..1747, 1754..1759,1763..1768) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative tetramer interface [polypeptide binding]; other site" /db_xref="CDD:381408" ORIGIN 1 ttagtttgct tctgtcattg cattcgtcgg gtaggatcac aagaaacaat aaataagata 61 cgagaattaa gaaaaacaca agaatccgaa tccgtcaccg aaacagaaaa tatatacaag 121 aaaaaaagct agaaaaattt acaaaagaaa cctcagcttg cctttacttt tttttcacgt 181 ttaagtgcaa ccacaaacga agaagcagaa acaagaccaa gaagagaagc agcatcagca 241 gagtggttaa taattctaac gccaaatcaa cttgaaacaa aacgcccaaa ttataagcaa 301 cagaaagcta gaaccaccga acaatcaaca tctaaagcgg caaaaaaaaa ctcatcagct 361 tcgaagcaac aaaacaaacc acaatcagta accattttta acaaacaatt ttgtaaacaa 421 tatttgaaac caaaaccatt ttcaaaaact tttaacaatc atttaagtaa caacaaatac 481 gaaggattca accaaaattt atacaaaaaa taagaactga accaattctc aacaccaatt 541 caacaactat ttcaacaaat aactgtaaac gtgtcgcgac tcaaagctcc tcccgctatc 601 ctgctctctc gcgtaaactc gtcgccatcg tctttttccg ttgtggtgta cgattttggt 661 gttttttctc caaaatatat atatttattg ttctacgcgt tcgtcgtcct tgtcccgtgc 721 gtgagacctt gtcctcgtgt gcgtctgtgt gtgtgcgtgt gcgagaagag gagtgcggta 781 gtttgtgtat gctatgtcag ggatcggggg cattggggtg ctcctcgagg cggctcaatt 841 tcttgagcag catgagaagc tcccgcaggc gggaggcggc ggcggtagcg ccctgggcgt 901 gggcgtggca ctgcctcaac agcagcagca gacggtgcac tgcaagagca actccattat 961 caacaacaac aatagcagcc agcacaatag aaatagcagc agtagcagta acgggattat 1021 tgcaacgcca ccgttcacga acggaaatgg caacggtacc gtcggcgtcg gtaacgcgag 1081 cgccattttc aacgttagcg tcaatgcgaa cgggaacggt ctgagcaacg gtcacagcag 1141 tccgcgcagt caattagccg ccgcagccac tgcccacgat tacgagtata gcgccgccgg 1201 agttgccaat ggacacagcg aaggtcgccc ccacgtctcg gcagccaggg atcagcagga 1261 ccatccgcag catcagcaac atgccaacca tatgcagatc cagcagcatt acggctatat 1321 gaggagtaac attggcggcg tgatctatgg cttgcacaag gactctgccg actctgcggc 1381 atcctcggca tgtggagcgg gagcgggagc agcagcggtg ggcatgagca ttgcctcctc 1441 ggcgccagcg gcgggatctc agctatcggc gcatcatcac acgggacacg gaggccgcag 1501 gcgcaccacc agttccaata gtaatggagc gggcacccgg gaggtgcaca acaagctgga 1561 aaaggagcga cgcgcccagc tgaaggagtg ctatgacctg ctcaaaaagg tgctgcccat 1621 gggtgacgag gaccgaaaga aaacatcaaa cttgacaata cttgacacgg cccacaaata 1681 tgtcaattcc ttgagtcatg aagtttgcga gcaggaggcg aagatagaga aactggccaa 1741 gcagaagatc gagctgcaga agcggctaaa gcaactgagc ttaaggaggg aatcgccgcc 1801 caccgatcag caaatcattc cacaggccga caaagcagtt tgtctggcaa caacagccac 1861 aacagcacca ccaacggcgg ccagtggcca caatggaacc acaattctat tcgatgcagg 1921 caacgcctgt gccactgggc agctaacaac tgtgataaac aaaactaatg gaggagcaac 1981 cgcagcagcc agcagcaaac acaatggcaa ccacacagga ggtgcaacaa ccacactgac 2041 tccggccatg ggcatcatga caattaaaaa tggcaatggc agcaacggca acatgctggc 2101 aatctcacca acgggaggcc acaatcatca gttgcaccag caccacaacg gcagcccagc 2161 gggcagtcca tcgggaatag gagccacaac tggagccacc atcacacgtg gctcgccaac 2221 gccatcgact ccatcgccgt cgcccagctc ctcgtccagt ggcgtctcgt tgtcgacctc 2281 atttatgggc ggctcctcat catcgtcctc atcctcctca tcatcatcat cttccagttc 2341 gtcgtccagt tcttcgtcgc ccacgcaaca acagcagata atcacgccca cggccacagc 2401 ccgtagtgtt ggcctaaaat tccatggcgg tgcgggcgct gctgtgccag ctggcggagg 2461 ttcagtgaat gggttccatc aggccgataa ggatcgcaat tacactttcc tgaggctcag 2521 tgctgggaca acggcacagt aacccaacca gtaacccaag caaacaacaa acaaccacaa 2581 c