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LOCUS NM_166983 2440 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166983 VERSION NM_166983.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2440) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2440) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2440) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2440) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2440) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2440) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2440) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2440) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2440) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2440) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2440) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2440) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2440) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2440) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2440) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2440) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2440) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2440) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166983.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2440 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2440 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /map="3E2-3E5" /db_xref="FLYBASE:FBgn0023215" /db_xref="GeneID:31331" CDS 653..2401 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="CG13316 gene product from transcript CG13316-RA; CG13316-PA; Mnt-PA" /codon_start=1 /product="Mnt, isoform A" /protein_id="NP_726879.1" /db_xref="FLYBASE:FBpp0070554" /db_xref="GeneID:31331" /db_xref="FLYBASE:FBgn0023215" /translation="MSGIGGIGVLLEAAQFLEQHEKLPQAGGGGGSALGVGVALPQQQ QQTVHCKSNSIINNNNSSQHNRNSSSSSNGIIATPPFTNGNGNGTVGVGNASAIFNVS VNANGNGLSNGHSSPRSQLAAAATAHDYEYSAAGVANGHSEGRPHVSAARDQQDHPQH QQHANHMQIQQHYGYMRSNIGGVIYGLHKDSADSAASSACGAGAGAAAVGMSIASSAP AAGSQLSAHHHTGHGGRRRTTSSNSNGAGTREVHNKLEKERRAQLKECYDLLKKVLPM GDEDRKKTSNLTILDTAHKYVNSLSHEVCEQEAKIEKLAKQKIELQKRLKQLSLRRES PPTDQQIIPQADKAVCLATTATTAPPTAASGHNGTTILFDAGNACATGQLTTVINKTN GGATAAASSKHNGNHTGGATTTLTPAMGIMTIKNGNGSNGNMLAISPTGGHNHQLHQH HNGSPAGSPSGIGATTGATITRGSPTPSTPSPSPSSSSSGVSLSTSFMGGSSSSSSSS SSSSSSSSSSSSSSPTQQQQIITPTATARSVGLKFHGGAGAAVPAGGGSVNGFHQADK DRNYTFLRLSAGTTAQ" misc_feature 1391..1627 /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain found in Max-binding protein Mnt and similar proteins; Region: bHLHzip_Mnt; cd11402" /db_xref="CDD:381408" misc_feature order(1406..1411,1418..1423,1427..1432,1442..1444, 1502..1510) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:381408" misc_feature order(1439..1444,1448..1465,1469..1474,1511..1513, 1520..1522,1532..1534,1538..1546,1550..1555,1559..1564, 1571..1573,1583..1585,1592..1597,1601..1606,1613..1618, 1622..1627) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:381408" misc_feature order(1439..1441,1448..1453,1457..1462,1469..1474, 1511..1513,1520..1522,1532..1534,1538..1546,1550..1555, 1559..1564,1571..1573,1583..1585,1592..1597,1601..1606, 1613..1618,1622..1627) /gene="Mnt" /locus_tag="Dmel_CG13316" /gene_synonym="bHLHe43; CG13316; CG2856; dMad; Dmel\CG13316; DmMnt; dmnt; dMnt; EG:114E2.2; Mad; Mad-3E; mnt; MNT" /note="putative tetramer interface [polypeptide binding]; other site" /db_xref="CDD:381408" ORIGIN 1 tcattttacg tttttttgcc gtagggtgcg cgtcgcagtc gccgtcgccg cagacgtcac 61 actctgaaag ttgcgtcagt tcaaaaaact taaatagtta ttaaaaaaag gaaacaaaaa 121 ccaaatcaac ttgaaacaaa acgcccaaat tataagcaac agaaagctag aaccaccgaa 181 caatcaacat ctaaagcggc aaaaaaaaac tcatcagctt cgaagcaaca aaacaaacca 241 caatcagtaa ccatttttaa caaacaattt tgtaaacaat atttgaaacc aaaaccattt 301 tcaaaaactt ttaacaatca tttaagtaac aacaaatacg aaggattcaa ccaaaattta 361 tacaaaaaat aagaactgaa ccaattctca acaccaattc aacaactatt tcaacaaata 421 actgtaaacg tgtcgcgact caaagctcct cccgctatcc tgctctctcg cgtaaactcg 481 tcgccatcgt ctttttccgt tgtggtgtac gattttggtg ttttttctcc aaaatatata 541 tatttattgt tctacgcgtt cgtcgtcctt gtcccgtgcg tgagaccttg tcctcgtgtg 601 cgtctgtgtg tgtgcgtgtg cgagaagagg agtgcggtag tttgtgtatg ctatgtcagg 661 gatcgggggc attggggtgc tcctcgaggc ggctcaattt cttgagcagc atgagaagct 721 cccgcaggcg ggaggcggcg gcggtagcgc cctgggcgtg ggcgtggcac tgcctcaaca 781 gcagcagcag acggtgcact gcaagagcaa ctccattatc aacaacaaca atagcagcca 841 gcacaataga aatagcagca gtagcagtaa cgggattatt gcaacgccac cgttcacgaa 901 cggaaatggc aacggtaccg tcggcgtcgg taacgcgagc gccattttca acgttagcgt 961 caatgcgaac gggaacggtc tgagcaacgg tcacagcagt ccgcgcagtc aattagccgc 1021 cgcagccact gcccacgatt acgagtatag cgccgccgga gttgccaatg gacacagcga 1081 aggtcgcccc cacgtctcgg cagccaggga tcagcaggac catccgcagc atcagcaaca 1141 tgccaaccat atgcagatcc agcagcatta cggctatatg aggagtaaca ttggcggcgt 1201 gatctatggc ttgcacaagg actctgccga ctctgcggca tcctcggcat gtggagcggg 1261 agcgggagca gcagcggtgg gcatgagcat tgcctcctcg gcgccagcgg cgggatctca 1321 gctatcggcg catcatcaca cgggacacgg aggccgcagg cgcaccacca gttccaatag 1381 taatggagcg ggcacccggg aggtgcacaa caagctggaa aaggagcgac gcgcccagct 1441 gaaggagtgc tatgacctgc tcaaaaaggt gctgcccatg ggtgacgagg accgaaagaa 1501 aacatcaaac ttgacaatac ttgacacggc ccacaaatat gtcaattcct tgagtcatga 1561 agtttgcgag caggaggcga agatagagaa actggccaag cagaagatcg agctgcagaa 1621 gcggctaaag caactgagct taaggaggga atcgccgccc accgatcagc aaatcattcc 1681 acaggccgac aaagcagttt gtctggcaac aacagccaca acagcaccac caacggcggc 1741 cagtggccac aatggaacca caattctatt cgatgcaggc aacgcctgtg ccactgggca 1801 gctaacaact gtgataaaca aaactaatgg aggagcaacc gcagcagcca gcagcaaaca 1861 caatggcaac cacacaggag gtgcaacaac cacactgact ccggccatgg gcatcatgac 1921 aattaaaaat ggcaatggca gcaacggcaa catgctggca atctcaccaa cgggaggcca 1981 caatcatcag ttgcaccagc accacaacgg cagcccagcg ggcagtccat cgggaatagg 2041 agccacaact ggagccacca tcacacgtgg ctcgccaacg ccatcgactc catcgccgtc 2101 gcccagctcc tcgtccagtg gcgtctcgtt gtcgacctca tttatgggcg gctcctcatc 2161 atcgtcctca tcctcctcat catcatcatc ttccagttcg tcgtccagtt cttcgtcgcc 2221 cacgcaacaa cagcagataa tcacgcccac ggccacagcc cgtagtgttg gcctaaaatt 2281 ccatggcggt gcgggcgctg ctgtgccagc tggcggaggt tcagtgaatg ggttccatca 2341 ggccgataag gatcgcaatt acactttcct gaggctcagt gctgggacaa cggcacagta 2401 acccaaccag taacccaagc aaacaacaaa caaccacaac