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LOCUS NM_166969 2386 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166969 VERSION NM_166969.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2386) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2386) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2386) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2386) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2386) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2386) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2386) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2386) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2386) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2386) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2386) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2386) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2386) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2386) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2386) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2386) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2386) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2386) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_166969.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2386 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2386 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /note="dunce" /map="3C9-3D1" /db_xref="FLYBASE:FBgn0000479" /db_xref="GeneID:31309" CDS 304..2232 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /EC_number="3.1.4.-" /EC_number="3.1.4.17" /EC_number="3.1.4.53" /note="CG32498 gene product from transcript CG32498-RE; CG32498-PE; dnc-PE; dunce phosphodiesterase" /codon_start=1 /product="dunce, isoform E" /protein_id="NP_726857.1" /db_xref="FLYBASE:FBpp0070494" /db_xref="GeneID:31309" /db_xref="FLYBASE:FBgn0000479" /translation="MSPKSMSRNSSIASERFKEQEASILVDRSHGEDLIVTPFAQILA SLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPPGAPLSQGEEAYTRLATDTIEE LDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSGNQISEYICSTFLDKQ QEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSF TGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELL TSLMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLEV GGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFKLLQNQGCDI FCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDR IQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNAT IEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSMIPPSPPPSGVDEN PQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGTTGTTAASALSGAGGGGGGGG GMAPRTGGCQNQPQHGGM" misc_feature 409..777 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /note="Phosphodiesterase 4 upstream conserved regions (UCR); Region: PDE4_UCR; pfam18100" /db_xref="CDD:465648" misc_feature 1210..1932 /gene="dnc" /locus_tag="Dmel_CG32498" /gene_synonym="CG10791; CG10792; CG10797; CG14267; CG14268; CG32498; Dmel\CG32498; Dnc; DNC; Dunce; Dunce PDE; EG:140G11.4; EG:96G10.7; EG:BACN05I09.3; EG:BACN5I9.2; fs(1)M42; PDE; PDE4; PDEII" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" ORIGIN 1 tcatataaca acgttcgccg ttcgctccgc acacacaatt tgcgttaaaa aaaaagttcc 61 gcaaaatcgc aattcgcgaa aatcgtgcac aattcgtgaa acggtaaaaa atcggtcgaa 121 aaccgcggat taatctggaa aaatcaacaa aatatataac gggcgaaagc gaatttcgat 181 gtagaaaatg gccagggcgc tagatcaccg ctcgagggcg gctcacccag cgccggtttg 241 gtactacaga atttgccgca gcgtcgcgaa tcgtttctat atcgctccga ttcggacttt 301 gagatgtcac ccaagtccat gtcccgaaac tcaagcatcg ctagcgaaag gtttaaagaa 361 caggaagcct ctatactcgt tgaccgatcc catggcgagg atctcattgt gacgcctttc 421 gcccaaattt tagccagctt acgttcagtg cgcaacaatt tattaagtct gacaaatgtt 481 ccagcatcaa acaaatccag gcggcccaac caatcgtcgt cggcctcgcg atcaggaaat 541 ccaccaggag ccccgctatc ccaaggcgag gaggcataca cccgcctggc caccgacaca 601 atcgaggagc tggactggtg cctcgaccag ctggagacca tccagaccca tcgcagcgtc 661 tccgacatgg cgtcgcttaa gttcaaacgc atgctcaaca aggagctgtc gcactttagc 721 gagtccagca gatcgggaaa tcagatttcc gaatatatat gttccacatt tttggacaag 781 caacaggagt tcgacttgcc atcgctgcgc gtggaggata atcccgagct ggtcgccgcc 841 aatgcagccg ctggtcaaca gtccgctgga cagtatgcac gctcccgatc gccgcgcggt 901 ccgcccatgt cgcagatcag cggcgtgaag agaccgctgt cgcatacgaa tagctttacc 961 ggcgaacgtt tgcccacctt cggtgtggag acacccaggg agaatgagct gggcacgctg 1021 ctcggcgaac tggacacctg gggtattcag atattcagca tcggcgagtt cagtgtcaat 1081 cgaccgctca cctgtgtggc atacaccata tttcagagta gagaattact gaccagtctt 1141 atgataccac cgaaaacttt tcttaacttt atgtctactc tggaggacca ctacgtcaaa 1201 gacaatccgt ttcacaattc gctgcatgcc gccgatgtga cacaaagcac taatgtgcta 1261 ctcaatacac cggcgctgga gggcgtattc acgccgctcg aagtgggcgg ggcgctgttc 1321 gccgcttgca tacacgatgt tgatcatccc ggcttaacca atcagttctt ggttaactca 1381 agttccgaac tagcattaat gtacaatgac gaatctgttt tggaaaatca tcatttagct 1441 gttgccttta aattattaca aaatcaagga tgtgatatat tctgtaatat gcaaaagaaa 1501 caacgccaaa cattgaggaa aatggttatt gatattgtgc tgtccacgga catgtccaag 1561 cacatgagtc tgctggccga cctaaagaca atggtggaaa ccaaaaaggt ggccggctcc 1621 ggagtactgc tgctggacaa ctacaccgat cgcatacagg tgcttgagaa tctggtgcac 1681 tgcgccgatc tgagcaatcc caccaagccg ctgccgcttt acaagcgctg ggtagccctg 1741 ctcatggagg agttcttcct gcagggcgat aaggaacgcg aatcgggcat ggacattagt 1801 cccatgtgcg atcgccataa tgccaccatt gagaagtcgc aggtgggctt catcgactac 1861 atcgtccacc cgctatggga gacctgggcg gacctggtgc atccggatgc ccaggatata 1921 ctcgacacgc ttgaagagaa cagagactac taccagagca tgataccgcc ttcgccgccg 1981 ccatcgggcg tcgatgagaa tccgcaggag gacaggatac gctttcaagt aacccttgag 2041 gaatccgatc aggagaacct cgccgaactg gaggagggcg acgagagtgg tggcgagagc 2101 accaccacag gcacaaccgg aaccaccgct gcatccgcgc taagcggagc tggtggcggt 2161 ggcggtggag gcgggggaat ggcacccaga acgggtggct gccaaaacca accgcaacac 2221 ggtggaatgt gacggagagt cgtgggaatt tatcgcaaat tacaggaaaa ggctcacaac 2281 tttttcctat tacgttagtg actactatta acacagaaaa aaccaaaaca aaaacctaaa 2341 acgaaaagca aaaaaaaaaa caaagaaaaa ctcttggaaa aaatgc