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LOCUS NM_166957 2687 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166957 VERSION NM_166957.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2687) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2687) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2687) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2687) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2687) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2687) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2687) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2687) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2687) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2687) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2687) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2687) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2687) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2687) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2687) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2687) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2687) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2687) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_166957.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2687 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2687 /gene="CG32793" /locus_tag="Dmel_CG32793" /gene_synonym="anon-3Ca; anon-3Cb; CG18089; CG18852; CG3591; Dmel\CG32793; EG:100G7.1; EG:100G7.2" /map="3C3-3C3" /db_xref="FLYBASE:FBgn0052793" /db_xref="GeneID:31280" CDS 123..2603 /gene="CG32793" /locus_tag="Dmel_CG32793" /gene_synonym="anon-3Ca; anon-3Cb; CG18089; CG18852; CG3591; Dmel\CG32793; EG:100G7.1; EG:100G7.2" /note="CG32793 gene product from transcript CG32793-RA; CG32793-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_726835.1" /db_xref="FLYBASE:FBpp0070525" /db_xref="GeneID:31280" /db_xref="FLYBASE:FBgn0052793" /translation="MTKFVVVGMCLLMAFGHMASVSAVTEAPEVEQSTESPIADMALI EDAPMAPKTPTEKPPIVQEAAMVVDAQEKSAQVAPQPHTVADFIIHPLIAFKPRQASL EEIQGKQATPSSSAPASPGTWLFGMNPAQQLGSSFSTLAGSVSGWFNDRLAAAGQQLP GLVETPVRESTTSTSTTTSTTTQRPDIVVRVQQRPQRNGNRNGNRNGNGNLNGGNLNN NRRRQRPNRFNNRLDSFEDDYYEDDYFQGNRFDDEFDDDEDEQSLEQFEDDDSLELRP QQKPKRKQTQVQTQNQRRKFQQEEQVISQKRRQSVTQNKKPKVQKKPVQPVVEESQDE EELDDDENENDDEEEEEQVQEDDSQEQDFQPEPIYGSSSSSTRRSQNQPNFIQRGQQS IISQIRQFTRGQTPGELASTLHRGPSSSSSGSSKTRRPQQTTLLVNRNGQTVYVAPEL LGLNSPYPYAYVQGQTKKQRVPINGAFPQPPLTVPVRRQGRPTQYITIPWSQLGLSPP DQQSVVSLAEGIQAQPLILNIPQSAISPVRGGASSSGQKKKRPQLTASAVPLLADASL MDIFQPPQIPPSRTGSSSSGSSIKPISAQPVLIAAKPVKAGGVGTTGLLPTRIRPGTI VEKAPAMEAMEKPMEVNEMKQEQEVMATEPAASAPQTAANGSEQQEFILVGDDDEPGV SRHVQPAFGDARYVSYGDFHPYFDLLTQNRRFALRKTGRSLEIPEEQVAPKGDLQKEE KPKEEEQKEKLPKEEVQLEEIKKEEPQKEELQKEEPQKEEPQKEEPRKEEPQKEEPQK EEPQKEEPQKEEPKVETPQPLEQSKLPA" misc_feature <2250..2591 /gene="CG32793" /locus_tag="Dmel_CG32793" /gene_synonym="anon-3Ca; anon-3Cb; CG18089; CG18852; CG3591; Dmel\CG32793; EG:100G7.1; EG:100G7.2" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" ORIGIN 1 acgaaacctc tgtctgtgga cccccagaaa tcgggagctt gattaagaac cagagcgata 61 caagtcgaga atcccagtgc gtgcgtgaaa ttagaaaccc gaagaaaatc cacaaaaaaa 121 ccatgaccaa gttcgtggtg gtgggcatgt gcctgctgat ggccttcggc catatggctt 181 ccgtttccgc cgtgaccgag gctccggagg tggagcagtc aacggagtcg cccatcgccg 241 acatggcgct gattgaggat gcgccaatgg ctcccaaaac tcccacggag aagccgccca 301 ttgtccagga agccgcaatg gtggtggacg ctcaggagaa gtccgcacag gtggccccac 361 aaccccacac ggtggctgac tttatcatcc acccgctgat cgccttcaag ccacgccagg 421 cctccctaga ggagatccag ggcaaacagg ccacaccgag ctccagtgcc ccggcctccc 481 cgggcacctg gctcttcggc atgaatcccg ctcagcagct gggctcctcc ttttcgacgc 541 ttgctggttc cgtttccggt tggttcaatg atcgcctggc agctgccgga cagcagttgc 601 ccggtttggt ggaaaccccg gtgagggagt caaccacaag caccagcacc accacatcaa 661 cgaccaccca gcgcccagac attgtggtgc gagtacagca gcgtccccaa aggaatggca 721 accgcaatgg aaaccgcaat ggcaatggaa acctcaatgg tggaaacctg aacaacaaca 781 ggcgtcgtca gcgacctaac cgcttcaata accgactgga ctccttcgag gacgactact 841 acgaggacga ttacttccag ggcaaccgat tcgatgacga gttcgacgac gatgaggacg 901 agcaaagcct ggagcaattc gaggatgacg attccctgga gctgcgtcct cagcaaaaac 961 ccaagcgcaa acagacccag gtgcagaccc aaaatcagcg caggaagttc cagcaagagg 1021 agcaggtgat cagccagaag cgccgccaat cggtgaccca gaacaagaag cccaaggttc 1081 agaagaagcc agttcagccg gtggttgagg agtcacagga tgaggaggaa ttggacgatg 1141 atgagaacga gaacgacgat gaggaggagg aagagcaggt ccaggaggac gacagccaag 1201 agcaggactt tcagccggag ccgatctatg gctccagctc ctcgtcgact aggcgcagcc 1261 aaaaccagcc caatttcatc cagcgcggcc agcagagcat catcagtcag attaggcagt 1321 tcacccgagg tcagacgccc ggagaactgg ctagcacgct gcaccggggt ccctcctcgt 1381 catcctcggg ctcttcgaag acccgtcggc cgcagcagac tacgctcctg gtaaaccgca 1441 atggacagac cgtttacgtg gctcccgagc tgctgggcct gaactctccc tatccctacg 1501 cttatgtcca gggtcagacg aagaaacaaa gggttcccat caacggtgca ttcccacagc 1561 caccactaac ggtgccggtg aggcgtcaag gtcgtcccac ccagtacatc acgataccct 1621 ggagccagct gggactctca ccgcccgacc agcaatcagt cgtttccctg gccgaaggca 1681 tccaagctca gcccctcatt ctgaatattc cgcagagcgc cattagtccg gtgcgtggtg 1741 gtgccagctc gagtggccaa aagaaaaagc gcccccagct gaccgcctcg gcggttcccc 1801 ttttggctga cgcctcactt atggacatct tccagcctcc ccagatcccg ccctccagaa 1861 ccggttcatc atcttccgga tcctccatca aaccgatctc cgcccagccc gtcctgattg 1921 ccgctaagcc cgtaaaggct ggtggagtgg gtaccactgg actgctaccc actcgcattc 1981 gtccaggaac gattgtagag aaggcccctg ctatggaggc aatggagaag cccatggagg 2041 tcaacgagat gaagcaggag caggaggtga tggccacgga gccagctgct tctgcgccac 2101 aaacggcagc caatggatcc gagcagcagg agttcatctt ggttggcgat gatgatgagc 2161 caggagtctc gcgacatgtg cagccagctt tcggggatgc ccgctatgtg tcctacggcg 2221 atttccatcc gtactttgat ctgctgacgc aaaacaggcg attcgcgctt aggaagaccg 2281 gcaggtcttt ggagattccc gaagagcagg tggcccccaa gggagacttg cagaaggagg 2341 agaagccaaa ggaggaggag cagaaggaga agcttccaaa ggaggaagtt cagctagagg 2401 agattaagaa ggaggagccc cagaaggagg agctccagaa ggaggagcca caaaaggagg 2461 agccccagaa ggaggagcca cgaaaggagg agccacaaaa ggaggagcca caaaaggagg 2521 agccacaaaa ggaggagcca caaaaggagg aacccaaagt ggaaacccca cagcctctgg 2581 agcagtcaaa actgccagcc taattttgta aacgaacagc cctccaaaaa tcgaacccaa 2641 acgagctcga attgaaataa tgaagataac aaagaaatat gataagc