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LOCUS NM_166956 2471 bp mRNA linear INV 26-DEC-2023 H (CG3588), mRNA. ACCESSION NM_166956 VERSION NM_166956.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2471) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2471) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2471) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2471) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2471) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2471) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2471) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2471) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2471) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2471) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2471) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2471) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2471) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2471) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2471) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2471) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2471) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2471) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_166956.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2471 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2471 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /map="3C3-3C3" /db_xref="FLYBASE:FBgn0025643" /db_xref="GeneID:31278" CDS 404..2383 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /note="CG3588 gene product from transcript CG3588-RH; CG3588-PH" /codon_start=1 /product="uncharacterized protein, isoform H" /protein_id="NP_726834.2" /db_xref="FLYBASE:FBpp0290283" /db_xref="GeneID:31278" /db_xref="FLYBASE:FBgn0025643" /translation="MRHAFVGLIVCWLAVCQPQAEAQFGGFGFQPQFAYQQPQFQQVY RQPQLQPQVYRQPQAYQQQPLVYYQQPQQPQQFRQRQGSVSKANTNAYERQVDFGNNL EYTQGVSNSRAVTKQNGQRVVTKSQAQTRDVDLGGLQLGNTLTRTRTNANGQVSQGIA DQFRIGNVGLGASLSPQNLQNGFGLQRGADGDLRLGLGLLNLDLDRNVANSNTLSQAQ VNANGKGARAGSNSNSQSNTQHFGGVTVTDTRANSNAFGKAQRGQTSATTGGFGGNAA TNGQSFGGPFQRVVRQNRRPKRKAQFVPFGYPRIGFGPVLSPLERPRRQFGRPGFGGP GFGGEFGGGPGFGGPGFGGPGFGGPGFEQEFYEPERQQHKKKGNKNQAHGNANAQGGP GFNQQASSNNHASPGNTGSSSISSNLAQDGSSGQVSSANTNTHQGQTANGGYQSDQNS QSQALNFRPGEQQASSANANTQHTQQGNRDTYDSNSGSTSTNNNKFGSATNTANTNSQ VVRDGNRQDATSDANSQSIFQGNNGQGDASAQTNAQTSSQQGPGGFISNSASSSATAT AGNGQSANANSNANAGGGVGGAGAGANAGGFGGGADANSGANGGGGSAGANAGANGGF GGFGGFGGFGGGGGGGANANSNAFGGYDGFGFFGR" ORIGIN 1 acgaaacgaa acgtccgacg tccaacaact aacatcgcgc tctccaaaaa cgcgtaaaaa 61 aaaaaaacaa gaaaaaatct ttaagtgcac taagagaaga gctacggagc agaactggcg 121 gaacaacaaa ctgaacaacg acaccgcaaa aaacacggcg gagagacaat aaaagtcgcc 181 cagctgccaa aaaggcgctc attgcgtgcg ctgttttcgc aacggcaacg gaaaattagc 241 cacccggttg cggtgcaagc gagatagcga gtgtacggca acggaatacg gattttcaga 301 gtgcgggaaa gtacgaaaag tacggaatac acgagaaccg gaggcaggag cacaaagaac 361 ggagaacggc gaacggcaaa cggagtgggg atacgtagcc aggatgcgac acgcatttgt 421 tggattaatt gtgtgctggc tggcagtttg tcaaccgcaa gctgaggcgc agtttggcgg 481 ctttggattc cagccacagt tcgcctacca gcagccgcag ttccaacagg tataccgcca 541 accgcagttg caaccgcagg tgtatcgcca accacaggct taccaacaac aacctttggt 601 ttattaccaa cagccccagc agccacagca gttccgccag cgacagggat ccgtttccaa 661 ggcgaacacg aatgcctacg agcgccaggt ggactttggc aacaaccttg agtacaccca 721 gggtgtgtcc aattcacgag cggttaccaa acagaatggc cagcgtgtgg tgaccaagag 781 ccaggcgcag acgagggatg tcgatctggg tggtctgcag ttgggcaaca cactaaccag 841 gaccaggacg aatgccaatg gtcaggtgtc gcagggcatt gccgatcagt tccgcatcgg 901 aaacgtggga ctcggagcct cgctgtcgcc acagaatctt cagaatggct tcggactgca 961 gcgtggcgcc gatggagacc ttcgcctggg cttgggtctg ctcaacttgg atcttgaccg 1021 caatgtggcc aattcgaaca ccctgtcgca ggcgcaggta aatgccaacg gcaagggtgc 1081 ccgggctgga tcgaacagca actcgcagtc gaacacccag cactttggcg gcgtcaccgt 1141 caccgatacg cgcgccaact cgaatgcctt tggcaaggcg caaaggggac agacctcggc 1201 caccaccggc ggcttcggcg gcaatgcggc caccaatggc cagagtttcg gtggtccctt 1261 ccagcgagtt gtgcgccaga ataggcggcc caagcgaaag gctcagttcg tccccttcgg 1321 gtatcctcga attggtttcg gccccgtctt gagtcccttg gaaagaccga ggaggcagtt 1381 cggcaggccg ggtttcggtg gaccaggatt tggaggagaa ttcggtggag gacctgggtt 1441 tggaggacct ggctttggag gtcctggttt tggaggacct ggcttcgagc aggagttcta 1501 cgagcccgaa cgtcagcaac acaagaagaa gggtaacaag aaccaggcgc atggcaatgc 1561 gaatgcccaa ggtggacctg gattcaacca gcaggcctcg agcaataacc acgccagtcc 1621 cggcaacacg ggcagcagtt ccatcagctc caatttggcc caggacggca gcagtggcca 1681 ggtgagctcg gccaatacaa acacccatca gggccaaacg gcgaacggtg gctaccagag 1741 tgaccagaac tcgcagagcc aggcgctcaa cttccggccg ggcgagcagc aggcctccag 1801 cgcgaatgcg aacactcagc acacccagca gggcaatcgc gacacctatg actcgaacag 1861 tggatccacc tccacgaaca acaacaagtt tggctccgcg acgaacacgg ccaacacgaa 1921 ctcgcaggtg gtcagggatg gcaatcgcca ggatgcgacc agcgatgcga acagtcagag 1981 catcttccag ggcaacaatg gccagggaga cgcctccgct cagacgaatg cgcagacgag 2041 cagccagcag gggcccggag gatttatcag caactcggcc tccagcagtg ccaccgccac 2101 cgctgggaat ggacagtcgg ccaatgcgaa ttcgaacgcg aatgcgggcg gaggtgtagg 2161 tggtgcgggc gcaggagcca atgctggcgg atttggaggc ggtgctgatg ccaattccgg 2221 tgccaatggc ggtggcggca gtgctggagc gaatgccggt gccaatggtg gcttcggtgg 2281 attcggtgga ttcggtggct tcggcggcgg cggtggcggc ggtgccaatg cgaacagcaa 2341 tgcctttggt ggctacgatg gattcggatt cttcggacgt tagttttaga ctttaatttt 2401 ctaaagactc acccaacttt tttttgtcac cccacgaaaa gcacaagaat aaaaatgcat 2461 tttgttaatt t