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LOCUS NM_166946 3303 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166946 VERSION NM_166946.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3303) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3303) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3303) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3303) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3303) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3303) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3303) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3303) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3303) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3303) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3303) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3303) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3303) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3303) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3303) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3303) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3303) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3303) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166946.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3303 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3303 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="egghead" /map="3A6-3A6" /db_xref="FLYBASE:FBgn0001404" /db_xref="GeneID:31239" CDS 718..2091 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="CG9659 gene product from transcript CG9659-RB; CG9659-PB; egh-PB; zeste-white 4; egghead; beta1,4-mannosyltransferase" /codon_start=1 /product="egghead, isoform B" /protein_id="NP_726818.1" /db_xref="FLYBASE:FBpp0070424" /db_xref="GeneID:31239" /db_xref="FLYBASE:FBgn0001404" /translation="MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEY GQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTR GDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTG ALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLI TYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSF DNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVV HSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYM YVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKD VRVLETV" misc_feature 1267..1833 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="Glycosyl transferase family group 2; Region: Glyco_trans_2_3; pfam13632" /db_xref="CDD:433365" ORIGIN 1 ttagtgtgcc ggcaaccgtc ttcggagctc caagcacgag aggagtactc acaaatcgcg 61 cgtacaaaac gaaaaagaat cccggccagt cgaaaacgtg cagcgaatca aagcgaaaaa 121 aaacgacaaa acaacgaact ataatagaca aatcgaagaa gagaaaaaaa aaacaaaaat 181 aaaaaaaaaa ttaaaaacga aaaccgaaaa cgaatacgcg cgattatgaa atgtctgacc 241 aggaaacaga gctgagagtc tcaaatgcaa gcaagccaac gccagcggca gcagcaacca 301 cgtccaagtt caccaacagc tgaagaggaa gcggaggaga cgagaccgcg aaacagtaca 361 gccaggagct gatagagcat ccggtgcacc acatatattg acctgggggt gcctggacca 421 aaacaacttc cgttcctctc ggcggcaatc gctgagcttt caggcacaaa caacttacaa 481 acatttagta tctttagcca gttagccgct ggctgactca tccacagtcg tttgagtcgg 541 gatcgaacga acgaacaaac aaggcagata aggatttccg attgcggaat tgccagaatt 601 gcacaagtct acttaaggct ctggaggacc aaagccactt aagttacgtt attacacaca 661 aaaactaaaa actgaaaaaa caaaaaacaa aaaacaagac acaacccgca aaccaagatg 721 aactccacca caaagcatct gctgcactgc acactgctca tcactgtgat agttaccttc 781 gaagtattct ccggcggtat taagattgac gagaactcgt tcacgctcgt ggatccttgg 841 actgaatacg gccaattggc cacggttctg ctgtacttat tgcgctttct cacgctgctc 901 acgctgcccc aggtgctgtt caatttctgc ggcctggtat tctacaatgc cttccccgag 961 aaggtcgtcc tcaagggcag ccccctgctg gcgcccttca tctgcatccg tgtggtcacg 1021 cgcggcgact tcccggattt ggttaagacg aatgtgctgc gcaacatgaa cacctgccta 1081 gacacgggac tggagaactt tctcatcgaa gtggtcacgg acaaggcggt gaatctgtca 1141 cagcatcgac gcatccgaga gatcgttgtg cccaaggagt acaagacgag aaccggggcg 1201 ttgttcaagt cgcgtgccct gcagtattgc ctggaggata atgtgaacgt gctgaacgac 1261 agcgactgga tcgtccatct ggatgaggag acgctgctca cggagaattc ggtgcgtggt 1321 atcattaact ttgtgctgga tggcaagcac ccgttcggcc agggcctgat cacctatgcc 1381 aacgagaacg tggtcaattg gctgaccaca ttggcggaca gctttcgggt ctccgatgat 1441 atgggcaagc tgcgtctgca gttcaagctc tttcacaagc cgctcttcag ctggaagggc 1501 agttatgtgg tcacccaggt gagtgctgag cgttcagtgt cctttgacaa cggaatcgac 1561 ggttcggtgg ccgaggattg cttcttcgcg atgcgggcct ttagccaggg ctacacgttc 1621 aacttcatcg agggcgaaat gtacgagaag tcgccgttca cgctgctgga cttcctgcag 1681 cagaggaaac gatggctcca gggcattctg ctggtggtcc actccaagat gatcccgttt 1741 aagcacaagc tcctgctggg catcagtgtc tattcgtggg tcaccatgcc gctgtccacg 1801 tcgaacatca tctttgcggc actgtatccc attccctgcc caaatctggt tgactttgtg 1861 tgcgccttca tcgcggccat taatatctac atgtacgtct ttggcgtaat caagtccttt 1921 tcactgtacc gcttcggttt gttccgattc ctggcctgcg tgctgggtgc ggtgtgcacg 1981 atacccgtga atgtggttat cgagaatgtg gctgtcattt ggggcctggt gggcaagaag 2041 cacaagttct atgtggttca gaaggatgtg cgcgtactgg agactgtcta gactattttg 2101 tggaactgga tgagggagga aaggagtcat cgagtgcagc catggtcatc atatcgccca 2161 cagaaaccaa aaaccaaatt aagcaaggca aaaacaaacg aaatttcgca caatttcgcc 2221 aggctcagtg cgttgtcctg gcacaatctg attgatttac tttatttgta cattttataa 2281 gcataagagt cactcaacaa tcacacccac acccacacat acacctgcac acacgcacat 2341 ataattgttg tttcgttcta aagtcatggt cattcacaac tttgccaaaa agaaaaagca 2401 aatcagatca gatcagatca tagaaatcag cacggaataa acggaatacc agggtgaccg 2461 acccaaagaa caaatgcaat agacaacgtc ttggagcgag atctatgaag tgcatcactc 2521 actagaaaat acaactattg cggcaataac aacaattggg gcaataacaa tgatccaaga 2581 ggaccacacg cgaaaactct ccattaagtg taatttcatt atatatatat attttttttt 2641 tttgtatagt ctgtagtgaa agaatgcgct atatttatat aaacgtaaat attgtatgta 2701 cattgtagat ttattattat aattacgatt atttaaaaat gtgtacattg atgtattgaa 2761 aatctgttaa atgtcattca caccgaaacc aaggttaaaa aaaaaagcga aaagcaaact 2821 taaatgttta gacttatgta cttacgtgcg caaattttga tgtactttgt gagcagtttg 2881 gcctatgtaa atacgtcatt ccaccacagg atgtatgccc cgaaggatta ggatcgacca 2941 ctttccgcat ccttgcgaag atcttcttca gcccagagaa gttgtggtgt gaatgatatg 3001 atcgtgattt gagaagagct cctcgatctt ctcggggagt ccccttcgaa tttcgttgtt 3061 cttatttttt agttggagta ctctgttttt agtcacattt cctttgtttg cctctgtcat 3121 tctgttaatc tgttatcggt gctttgaaac ccacgcccaa atcactcacg ccccctgaaa 3181 atgtggaaca cgtgagttgc agtcacctcg taaatccgaa aaacacaaaa gaaaaatggc 3241 gaaaaaagga tgtcgcgtca cacacacaca caccacccaa cacacacaca tacaactgtt 3301 acg