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LOCUS NM_166941 2721 bp mRNA linear INV 26-DEC-2023 A, mRNA. ACCESSION NM_166941 VERSION NM_166941.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2721) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2721) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2721) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2721) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2721) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2721) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2721) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2721) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2721) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2721) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2721) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2721) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2721) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2721) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166941.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2721 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2721 /gene="boi" /locus_tag="Dmel_CG32796" /gene_synonym="Boi; CG13756; CG32796; CG7894; CT23737; CT33235; Dmel\CG32796; EG:BACH59J11.2" /note="brother of ihog" /map="3A3-3A3" /db_xref="FLYBASE:FBgn0040388" /db_xref="GeneID:31229" CDS 194..1837 /gene="boi" /locus_tag="Dmel_CG32796" /gene_synonym="Boi; CG13756; CG32796; CG7894; CT23737; CT33235; Dmel\CG32796; EG:BACH59J11.2" /note="CG32796 gene product from transcript CG32796-RA; CG32796-PA; boi-PA; brother of iHog" /codon_start=1 /product="brother of ihog, isoform A" /protein_id="NP_726812.1" /db_xref="FLYBASE:FBpp0070442" /db_xref="GeneID:31229" /db_xref="FLYBASE:FBgn0040388" /translation="MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSG LQITFFKVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREYEM GNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGTSKSNLPVPEL REVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAAEYLKATVDGGMSRSFKID LLRPGTPYEFKLQSFNSDAASEFSAIRQARTRKTHEQPASSSATPVPANKAVEQHQNS LYPLIAGAAGGGILLLIASLVVCLCLKRRENSQPEDENKPQLEHIQADFVTSAVLGVG GHHKSGDVRRLNGVIPRMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLM HKRLDYHQQPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPGGLVGIPIV PGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV" misc_feature <200..>940 /gene="boi" /locus_tag="Dmel_CG32796" /gene_synonym="Boi; CG13756; CG32796; CG7894; CT23737; CT33235; Dmel\CG32796; EG:BACH59J11.2" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature 677..940 /gene="boi" /locus_tag="Dmel_CG32796" /gene_synonym="Boi; CG13756; CG32796; CG7894; CT23737; CT33235; Dmel\CG32796; EG:BACH59J11.2" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(905..910,914..919) /gene="boi" /locus_tag="Dmel_CG32796" /gene_synonym="Boi; CG13756; CG32796; CG7894; CT23737; CT33235; Dmel\CG32796; EG:BACH59J11.2" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" ORIGIN 1 actaatctat cgataatgtt ggtcttttac acgtttaatt ttaacaagtt aacttctgca 61 gcatttttaa caatttacat ttttgtatct ataaatttat tgttccgtca gttgcttagt 121 gttcatgagc tttctgaata gcaattatcc gatcttattc cttatcatcg attttatatg 181 aaaatgtaca tcgatgatct ggtctggcaa cgccagatat tcaaatgttc agaattcgag 241 catggtgcct ccgtcacgac ccaatgtcac ccgtctgtcg gacgagtccg tgatgctgcg 301 ctggagtgtg ccacaaaact ctggactcca gatcaccttt ttcaaggtgc agtatcgcat 361 gttgggcgac ggaaaaaatc ggaggaagaa ctggcagacg accagcgaca atatcccgta 421 cggaaacgcg cacggatccg ggcctggcca ggggaacagt cactggcggg cgcggaaccg 481 ggacagggag tatgaaatgg gcaatccgcc caagaacttc acctcctccg ttacgggact 541 gaccgccggc aagtactacc gcttccggat cgtggcggtg tactccaata acgacaacaa 601 ggagggcaac acctccctca agttcttcct gcagaatgga acgtccaagt cgaatctgcc 661 agtgccggaa ctacgcgagg tggagacgct ttccgagtcg gccgtggtgc tccattggtc 721 cctggtatcc tcgactcaaa atgaggatat agacgggtac tatgcctact ataggccagc 781 ggactcagca gcggagtatt tgaaggccac ggtggatggc ggaatgagca ggagcttcaa 841 gatagacctc cttcgtccag gaacccctta tgagttcaaa ttgcaatcgt tcaactccga 901 cgcagcctct gaattcagtg ctattcggca agcgaggacc agaaaaacgc acgagcaacc 961 ggcttcatct tcggccacgc cagtgccagc caataaggca gtggaacagc accagaactc 1021 cttatatcca ctgatcgcag gtgccgctgg cggaggcata ctactcctca tcgcctcatt 1081 ggtggtctgc ctttgcctaa agagacggga aaactctcag ccggaggatg agaacaaacc 1141 gcaattggaa cacattcaag cggactttgt tacctccgcc gtcctgggag ttggtggcca 1201 ccacaaaagt ggcgatgtaa ggcgcctcaa cggagtgatt ccgaggatga atattacgcc 1261 caatccgctg gcccaggaaa cggcatccga taagaacaac tctggactgc atcagaatgg 1321 ccttcaccac gcacagccgt accatccgcc tggcacgccc actctgatgc acaagcgact 1381 ggactaccac cagcagccgc cgccggtgcc tccgcactcg gcctattacc aacaggcacc 1441 cacgcaccag ccgtcgccga tgatggagcg cagtgtcagg ggtcaccagc agcccggggg 1501 ctttcatatg gaggagggca cacccacgcc gaccaggata ccatccctgc ggcgacagcg 1561 acgcacctcg ggcaaccagc aggtgcacaa cagccacagc aatctcaata ttggcctgag 1621 ccaccacaac aacaacaaca acaacctgcc gccgcaccac cagcatctgc accaccaccc 1681 cggccatccg ggtggcctgg tgggcatacc catcgtgcca gggagcccta gggtccagag 1741 atcgccgatg ccgagcaggg cgatgatcaa gaggacgcgc ctgggcagcc acacggacaa 1801 catatcgtcg ggcagtctga acagtattga ggtgtgatgg ctcgcagagg aggcaactaa 1861 ctagtggact agtgggcgga gcagcacaac gaggagaaat atacctaagc ggcaagcgaa 1921 agtggttccc caaaaacaga cagtttcaag tagacttaag gatccgaaac tagatgtgta 1981 ttattgagat aatcgtagga caggtcggca gagcagctcg aaaccctcga atattagctt 2041 taaggcaccc ggtactgttt agttttccaa aaaaccaatt aatttggcca atcattaagc 2101 ttagaactag ggaatttgcc attaacagaa gtttctgtcg tttcaaatgc tcgagtaact 2161 ttgtgctaaa acactagtaa tcaagttttg ttttcatttt gagctcatta aaatgtattt 2221 cgagcagaac gtttaattaa aagaaaaaaa cagctaagca gctaagtcgt taaacgttaa 2281 tgctgcttcg ttttgtttta gttaaatatt gaatttgaaa atatacaaac tttagtataa 2341 ggaattggta atgtaagact tttttcgttg ctgccggcca gatagtcagt agaattacta 2401 atgttaagtt ttttttttta ttattgatag aactatttcg ggggccaaat tttatctcga 2461 ataagccctg tagcatagcg ttatttattt attgcagtgt aaacgtcagg cgtcagcaac 2521 tcaaattgat tagttcaatt aacaagcaac ctaatgtacg tttaagtcaa accaactata 2581 tagcattaag ttaatacatt tctagatgtg actaatacac aaaacccaag agagaagcat 2641 cctaaactcg atttaagctc ataggcggca gttttaaacg aatatgcgag tcctgaaatt 2701 aaaaagtgaa tctttaaaca t