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LOCUS NM_166888 1466 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_166888 VERSION NM_166888.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1466) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1466) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1466) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1466) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1466) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1466) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1466) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1466) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1466) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1466) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1466) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1466) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1466) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1466) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1466) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1466) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1466) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1466) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166888.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1466 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1466 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /map="2A4-2B1" /db_xref="FLYBASE:FBgn0025382" /db_xref="GeneID:31103" CDS 663..1373 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="CG14791 gene product from transcript CG14791-RB; CG14791-PB; Rab27-PB" /codon_start=1 /product="Rab27, isoform B" /protein_id="NP_726743.1" /db_xref="FLYBASE:FBpp0070280" /db_xref="GeneID:31103" /db_xref="FLYBASE:FBgn0025382" /translation="MRAAPPEPEPLQLAGSGEQFLVLGDSGVGKTCLLYQYTDGRFHT QFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFD LTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRRYRLP YIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCLPNIAYGQPEDLV RLHDRREEPCSRRNCRNC" misc_feature 717..1223 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a...; Region: P-loop containing Nucleoside Triphosphate Hydrolases; cl38936" /db_xref="CDD:476819" misc_feature 732..755 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="G1 box; other site" /db_xref="CDD:206700" misc_feature order(738..758,897..899,1065..1070,1074..1076,1155..1163) /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206700" misc_feature 807..809 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="G2 box; other site" /db_xref="CDD:206700" misc_feature 819..827 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="Switch I region; other site" /db_xref="CDD:206700" misc_feature 888..899 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="G3 box; other site" /db_xref="CDD:206700" misc_feature order(894..899,945..950) /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="Switch II region; other site" /db_xref="CDD:206700" misc_feature 1065..1076 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="G4 box; other site" /db_xref="CDD:206700" misc_feature 1155..1163 /gene="Rab27" /locus_tag="Dmel_CG14791" /gene_synonym="18543235; AAF45634; AAF45635; CG14791; dm-Rab27; Dmel\CG14791; DmRab27; EG:80H7.4; O76901; rab27" /note="G5 box; other site" /db_xref="CDD:206700" ORIGIN 1 aatttgattg ctgaacacta ggattataga aacagtggac tattcgagca cgggatacac 61 tcctgacttt gaagccttcg tcggagagca aagcttaggc gccgtcccgc ggaagctccg 121 tccaaagccg ttccattctt aaagttgccc gagggattat gtctcgagag tgcttcgaag 181 tactcacgaa ataaccacgt tcccgtggga aaggacacct gtgcggcgca cctgtcgcgc 241 gcggaagcgc ttgaaagctg gcgcaagctt tggctgaaag ctgagcctcg gaaaagggac 301 tgcctgttgg cggccaacga gccctgtagt ctgtgctggg cagcgcatgg caacaggtcg 361 ggcagcgcac cgcccagagg atccactgcg ttgcatccgc agcatccgca cagcctcgga 421 gttttcgaag tcctcgtggg tcgcttgttt tcgtttagca aacctctgca aggtggttga 481 aggtcccttc ccccgcgcgg acgaattgcg cgcgctaaaa ataacggttg cccgcccagt 541 cagtctggtc cagtcagctg aatcgcagat tccttccaga tccttggagt gacgagtggc 601 gtgcggcgtg ccgaaagaag ccgccttggg cgccaaagtc gacggcgggc gtcggagcag 661 aaatgcgtgc cgcgcctcct gagcctgagc ctctgcaatt agccggatcc ggtgaacagt 721 tcctcgtcct gggcgactcc ggcgtgggaa agacctgtct cctctaccag tacacggatg 781 gccggttcca cacccagttc atctccactg tgggcatcga cttccgcgaa aagcggctgc 841 tgtacaactc ccgcggacgc cgccaccgca tccacctgca gatctgggac accgccggac 901 aggagcgctt ccgttcacta accacggcgt tttaccgcga cgccatgggt ttcctgctca 961 tcttcgacct gaccagcgag aagagcttcc tggagacggc caactggctg tcgcagctgc 1021 ggacgcacgc ctactccgag gaccccgacg tggtcctctg cggcaacaag tgcgacctgc 1081 tgcagctgcg cgtggtgagt cgcgaccagg tggcggccct ctgccgacgc taccggctgc 1141 cgtacatcga gacgagcgcc tgcaccggcg ccaacgtcaa ggaggccgtg gagctgctgg 1201 ttggccgggt catggagcgg atcgagaacg cggcctgcaa ccgcgagttc tccctgctac 1261 tgacccagtc gcgatgcctg ccgaacatcg cctacggtca gccggaggac ctggtgcgcc 1321 tccacgatcg gcgagaggag ccctgctcgc ggcgcaactg ccgcaactgt taggtgccat 1381 gcccgtggcc aagtcaccct gctttgttcc ttgactcgtg tttccgaatc taagtgtgtt 1441 tcgctgtaaa taaatgttga ttgttg