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LOCUS NM_166862 2193 bp mRNA linear INV 26-DEC-2023 B (CG5273), mRNA. ACCESSION NM_166862 VERSION NM_166862.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2193) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2193) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2193) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2193) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2193) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2193) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2193) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2193) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2193) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2193) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2193) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2193) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2193) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2193) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2193) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2193) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2193) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2193) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166862.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2193 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2193 /gene="CG5273" /locus_tag="Dmel_CG5273" /gene_synonym="Dmel\CG5273; EG:BACR19J1.3" /map="1C4-1C4" /db_xref="FLYBASE:FBgn0040382" /db_xref="GeneID:31021" CDS 206..1615 /gene="CG5273" /locus_tag="Dmel_CG5273" /gene_synonym="Dmel\CG5273; EG:BACR19J1.3" /note="CG5273 gene product from transcript CG5273-RB; CG5273-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_726698.1" /db_xref="FLYBASE:FBpp0070132" /db_xref="GeneID:31021" /db_xref="FLYBASE:FBgn0040382" /translation="MMASSGGACSPFAYVAWALFALLLTHGGDNVVDARRNQGNQRKT SSSSSSSNYGHVTQPSYNTNGHAAGNSHADVAKLSYPNYNSQPNRPMAAGSSGSPGSA PQPGWNVPQGPPPAYSASNPAGGARPNMHEPPPAYHAPNYGAAPPNYGAATGSNVHQP QYSGVPAGATYYPAAGPGSGYSPNIPAGATYYPSAGHVPMGGGYHPAAAPPPGATYYQ AGSALPPGATYYSAPPQQSSSGLGFGTGLLAGGLGGALLGHALTPSGGSSSSQPVAAA PAAGQDRIIIINNGVPVNASDGTTVINAAGVAAAPGAVPAAPVPSSNTTQDAQQPAVP MAPMPFNPETSNMTAPDPAAPPPPGGIICVPTKVNETDPADSTKMIEVEKIACYPAPP PPAASAGEGPAPLAPMAADQPGSQQVQQVQQAQDVAAPIQASVRSHTGGARALEGLTM RTLLLVLMSGVVAKRLAGF" misc_feature <500..>670 /gene="CG5273" /locus_tag="Dmel_CG5273" /gene_synonym="Dmel\CG5273; EG:BACR19J1.3" /note="hnRNP-L/PTB/hephaestus splicing factor family; Region: hnRNP-L_PTB; TIGR01649" /db_xref="CDD:273733" misc_feature 701..1369 /gene="CG5273" /locus_tag="Dmel_CG5273" /gene_synonym="Dmel\CG5273; EG:BACR19J1.3" /note="Domain of unknown function (DUF4813); Region: DUF4813; pfam16072" /db_xref="CDD:435117" ORIGIN 1 caaataacag tttttaccaa ttaaaaaact tgttttgcgg acaaactacg cgagcagctg 61 aaaacgagca gaagcatcca aaacgggttt cggtaattag catgcacatc agtgaccgat 121 gatctgcatt gacgtatttg ccgtgtttga catttatgta gtcttgtctc cactcgtcta 181 agggtgaagc actaatccgg atcacatgat ggcctccagt ggtggcgcct gttccccttt 241 cgcctatgtg gcctgggcgc tgtttgcctt gttgctgacg cacggcggag acaatgttgt 301 ggacgcccgg cgtaaccagg gcaaccagcg gaagacctcc tcctcgtcaa gctcctccaa 361 ctacggtcac gtgacgcagc ccagctacaa cacgaatggc cacgccgccg ggaactctca 421 tgcagatgtg gccaaactga gttaccccaa ctacaactcg cagccgaatc gaccaatggc 481 cgcgggctca tcagggtccc caggctccgc ccctcagcca ggttggaatg tgccgcaggg 541 tccgccgccc gcctactccg cttccaaccc cgccggagga gcccgaccca acatgcacga 601 gccgccgcca gcctaccatg cccccaacta cggagcagct cctcccaact atggagccgc 661 caccggatcg aatgtccatc agccgcagta ctctggagtg ccagctggag ccacctacta 721 cccggctgca ggacccggca gtggctattc ccccaatatc cccgctggcg ctacatacta 781 tccgtccgcc ggccatgttc ccatgggcgg tggctatcac ccagctgctg ctccgcctcc 841 gggggccacc tactaccagg cgggatctgc tttgccgccc ggagccacct attattctgc 901 accaccacaa cagtcctcct ctggcttggg cttcggaact ggactgcttg ctggcggctt 961 gggaggtgcc ctgctgggtc acgccctcac tccctcggga ggcagttcct cctcgcagcc 1021 ggttgccgca gctccagctg ctggtcagga tcgcataatc atcattaaca acggcgtgcc 1081 agtgaatgcc agtgatggca ccactgtgat aaatgcagca ggtgtggctg ctgccccggg 1141 agcagttcca gcggccccag ttccctcttc caacaccacc caagatgccc aacagccagc 1201 cgtacccatg gcaccaatgc cctttaatcc agagacctct aacatgaccg cgccggaccc 1261 agctgctccc ccaccgcctg gaggcattat ttgtgtgccc accaaggtaa acgaaacgga 1321 tccggctgac agcaccaaga tgatagaggt ggagaagatt gcctgctacc cggcaccccc 1381 gccaccagct gcttccgccg gcgagggtcc agcaccactg gcgcccatgg ccgctgatca 1441 accaggatcg cagcaggtgc agcaagtgca gcaggcacag gatgtcgccg ctccaatcca 1501 ggcatccgtt cgctcccaca ccggcggagc tcgggccttg gaaggattga ccatgcggac 1561 ccttctgctc gtgcttatga gcggagtggt ggccaagcgg ctcgctggct tttagagacc 1621 atgcttctgg aacgttccac tgtgcaccca ctcaattacc cgactaccta ctgtaccttc 1681 ctccccagct gttgtggcct tggcgcgcat atttgcgctg accaacatcg ataattccag 1741 gcgctaattg gacaaaaact cttgaattat gccgtaccat ctccgactac agtatttgtg 1801 gataaacaag ctggcttccc agtcaaaaag cccccttttc caatttggcc ttcaattgtg 1861 attgttgcgg tgtgcatggg ccccgtaacc gtaaccgggc ccggacccat cccagtgtgc 1921 tcgaaatcaa agcaaacgct cgaatatctc tgcaactaca tacatacata tatatatata 1981 tatatacatt tatatagccc tatgtgcaaa cccaactcaa aagccttctg aagaaagaca 2041 acctgaatgt aagttcccac taaaagtgtg tatttttcta gacttgttag cgtaattgtt 2101 gcttgttttt gtattgctgt gagcaaacgt atttgttgca ctcttcaatt gttgaataaa 2161 ataaaagctt tcgcctacac ctacaacacc cgc