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LOCUS NM_166858 1472 bp mRNA linear INV 26-DEC-2023 D, mRNA. ACCESSION NM_166858 VERSION NM_166858.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1472) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1472) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1472) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1472) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1472) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1472) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1472) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1472) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1472) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1472) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1472) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1472) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1472) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1472) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1472) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1472) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1472) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1472) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166858.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1472 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1472 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="SKP1-related A" /map="1B14-1B14" /db_xref="FLYBASE:FBgn0025637" /db_xref="GeneID:31016" CDS 683..1171 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="CG16983 gene product from transcript CG16983-RD; CG16983-PD; SkpA-PD; Skp1-related gene A; skpA; SCF-betaTrCP complex" /codon_start=1 /product="SKP1-related A, isoform D" /protein_id="NP_726692.1" /db_xref="FLYBASE:FBpp0070119" /db_xref="GeneID:31016" /db_xref="FLYBASE:FBgn0025637" /translation="MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIV PLPNVNSTILRKVLTWAHYHKDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLFEL ILAANYLDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEEQVRKENEWCE EK" misc_feature 692..1060 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins; Region: BTB_POZ_SKP1; cd18322" /db_xref="CDD:349631" misc_feature order(755..760,770..772,782..784,794..802,815..817, 821..826,992..994,1001..1006,1010..1012) /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="cullin binding site [polypeptide binding]; other site" /db_xref="CDD:349631" misc_feature order(968..970,980..982,992..994,1001..1003,1016..1018, 1028..1030,1037..1042,1046..1051,1058..1060) /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="F-box protein binding site [polypeptide binding]; other site" /db_xref="CDD:349631" misc_feature 1016..1159 /gene="SkpA" /locus_tag="Dmel_CG16983" /gene_synonym="anon-WO03040301.234; anon-WO03040301.236; anon-WO03040301.238; CG16983; Dmel\CG16983; dSkip-1; dSkp-1; dSKP1; dskpA; dSkpA; EG:115C2.4; l(1)G0037; l(1)G0058; l(1)G0109; l(1)G0389; Skp; Skp1; SKP1; skpA; SKPA; spkA" /note="Skp1 family, dimerization domain; Region: Skp1; pfam01466" /db_xref="CDD:460222" ORIGIN 1 tcaccattct ctattcgcca tttgaaagta tcggtgtaat ttgttttcag agaaattaat 61 ttccgtttac tgtgcaattc ggtgtgaaag tgttcagatt tatcaatgcg tattctgctt 121 tcgacttcgc caccaatctg tgctgcaagt taccattacc aggtccacct ggttcccgcc 181 agttttcttt cattgtggct agttgttgtt cgtgccttcg ataaagacgt ttagaggtgt 241 ttttagagtt tcgccatctg gtcactatag ccgtttcgtt ttttacgtga gtattgtgaa 301 tttggtgtgt tgatttatat ctcagttgga gcctgcgtgg aaatagtgtc agtacgttta 361 aaggcatcat cgtaaggtta gtcggaaaac aaataaaaag cctacaaata gcaagcaaga 421 acgctttcgc aaccacaaga aaaacgaaca tacgcacgca tccatctgtg gtagagtcgg 481 cttgtgtggg ggtgagtgga tgtgtgggtg agcatttctg gaaagtgccg ttctctatgt 541 ttcgattcta cttatccctt catcaccatt tcatcgttga atcatcacga aagaaacatc 601 gaaagtgcac aatcgtttgt tatctttgta cgaaaacaac ggtgatttcc acacaggcat 661 aacctgcaag agaaagccca aaatgcccag catcaagttg caatcttcgg atgaggagat 721 ctttgacacg gatatccaga tcgccaagtg ctccggcact atcaagacca tgctggagga 781 ctgcggcatg gaggacgatg agaatgccat tgtgccgttg cccaatgtga attcgacgat 841 tcttcgcaag gtgcttacct gggctcacta ccacaaggac gacccccagc caacggagga 901 tgatgagagc aaggagaagc gcacagacga cattatctca tgggatgcag atttcctaaa 961 agtcgaccag ggcacactgt ttgagctgat attggcagcg aactatctgg acattaaggg 1021 ccttctggag ctcacctgca agactgttgc aaacatgatt aagggaaaga ctcccgagga 1081 aatacgcaag accttcaaca ttaagaagga cttttcgccc gccgaggagg agcaggtgcg 1141 caaggagaac gagtggtgcg aggagaagta aagcgcggca tttcgcggga ccaacattaa 1201 gttgaaacag ctaggggatt cgggaacgaa ttggatttgc agcattgcaa ctttacttag 1261 ttgctacttt catttacatt tttttttatt tttaacccca gcagagactc gatttaaatt 1321 gtgtataaat gatctgttgc tgatttgatt cgcggggttc attttttgtc gtaaatatat 1381 ctcatataca tacatatgcg agattgtaac actctcttta acctattgga gtaacacttg 1441 atttcacttt aataaatata actacccaac ac