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LOCUS NM_166841 3402 bp mRNA linear INV 26-DEC-2023 C (CG3777), mRNA. ACCESSION NM_166841 VERSION NM_166841.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3402) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3402) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3402) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3402) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3402) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3402) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3402) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3402) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3402) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3402) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3402) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3402) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3402) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3402) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3402) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3402) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3402) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3402) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166841.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3402 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3402 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /map="1A1-1A5" /db_xref="FLYBASE:FBgn0024989" /db_xref="GeneID:30979" CDS 234..2873 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /note="CG3777 gene product from transcript CG3777-RC; CG3777-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_726665.2" /db_xref="FLYBASE:FBpp0070067" /db_xref="GeneID:30979" /db_xref="FLYBASE:FBgn0024989" /translation="MLLKVFLLVFIATHHLVDSAGPLSNIASESKPKSFEEILPSAVP FETSHKHPGAGEWVEGFQTSHKISIRATDSADYSMNLLPTKERPELNPVLSALINEDV MKSIEAKRAIEEEELAEVRREIEQAAVLELAQKRGFTTTETPALLLTTLPTAGKKLDN LDEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPNGQDYEYEYVYYYEEDDDS SKVDPSAEPDTRGKTRYTNIERSTTATPSGNSLQSDKAKGRSSDTSEDIEAERLPMIT RFPSRGKNIEVPPTAALDSLEIAAERKKISVKRPSLELVDSATFNTDEKQTKAARKGE NELKPVIAIEQEEAARKKMQQVKEEQARKEKETEMSIDQEDFEQTTPSMEKAALDLYA ILTNENLNNEQTTVIPDTVGSEGFTTLATETASTDEDEAGVMTTLINEISSSTSTTTT AATTTTTTTTTEPPTTTSTTTTTTAAPSLFGGRRAGLSGLGGRNRFKLTRAEGGSTTT STTEASVAAETNKTGRNRFSRPSIGGRSRPGARTTTAPDATSVAAPDAEEGIVVAKEV KPVSTSFARGRPRNRFSLRVSTTTARPSEESPAEDDAPAESSSTTTRSTLRGRPGLGL RGRSRTTTTKAPASSEGAEAVEPNATASSEDVKSGLISPSTGESGRPSRFNIHRAGSN RLLSRGKLGRSGVSTEAPKESQTAEDSAAESSSHLNDVKEEQMSAGEFSEKTNEAGDS AAVVPAAPVSGLNRLRTRPRLNALTHKTDAVKPKASAAPAPAPRKINPLLAKRRLQLG ATSTTESPAEEEHLALDSSAEQSDKEESFAGGSNETGGEGPGKPEHETTEATEATTKQ QPRGLGLLGQRRRLPLRKPGTIL" ORIGIN 1 tgccatttca cgttcagcta gcagcgaaat cgaaagtgac tgctccccga agatccgaag 61 ataaaataaa tttagagagg tcttcaaaaa aaaaaaaagt tcatgaagct gaagcacgca 121 gttgactttc aaaagtgtca ttaaaatcta tgaaaaatcg cagttagcga aaaagttgct 181 gtagcagcat tgaagtcgcc taggagcaac aagaacaaca atcacatctc aaaatgcttc 241 tcaaggtatt tttactggtc ttcatcgcca cccaccactt ggtagactca gcgggtcccc 301 tttccaatat agccagcgaa agtaaaccaa aatcgttcga ggagattttg ccttcggcgg 361 ttccctttga gacctcacac aaacatccgg gtgccgggga gtgggtggag ggatttcaaa 421 cctcccataa aataagcata agggccaccg attccgctga ctattcgatg aatctgctgc 481 ctactaaaga gcgacccgaa ttgaaccccg ttttgagtgc acttatcaac gaagatgtta 541 tgaagagcat cgaggccaaa agagccatag aagaagagga gctggccgag gttaggcgtg 601 aaattgagca ggccgccgtg ttagagttgg cccagaagag gggctttacc actactgaga 661 cacctgctct tctgttgacg actttgccca cagctggcaa gaagctcgat aacttggatg 721 aggacatagt cctggatcct cacgaagatt ttatcaacca aaattttgcc ctggagagtg 781 cgggtagtga gaacagcaag aaatcccgaa tagagattaa aaagggaccc aatggccagg 841 actacgagta cgagtatgtc tattactatg aagaggacga tgactcaagc aaggtggatc 901 catctgcaga gcccgacacg cgtggtaaga ctagatatac caatatcgag aggagcacga 961 cggccactcc gagtggaaat agcctacaga gtgacaaggc caaaggaaga tcatctgata 1021 cctctgaaga tatagaggct gaacggcttc cgatgatcac tcggtttccc agtcgtggca 1081 agaacattga agtgccacca acagcagctc ttgattcttt ggaaatcgct gccgagcgca 1141 agaagattag tgttaagcgc cccagtttgg agttggtgga tagtgctacc ttcaacacgg 1201 atgagaaaca gaccaaggca gctcgcaagg gtgaaaatga attaaaacca gtaattgcta 1261 tcgaacagga ggaggcagcc agaaagaaaa tgcaacaggt taaggaggag caggcaagga 1321 aagagaagga gaccgaaatg tcaatcgatc aggaggattt tgagcagacc acgccgtcca 1381 tggagaaggc cgctctagat ctttatgcca tattgaccaa tgaaaacctc aataacgaac 1441 aaactactgt aattccggat accgtaggtt cagagggttt caccactttg gcaacagaaa 1501 ctgcaagtac tgatgaggat gaggccggtg tcatgaccac gctgattaat gagatttcat 1561 cgagtaccag caccactacg acggcagcaa caaccaccac gactacaaca acaacggaac 1621 cacctacaac aacctccacc actacaacaa ccacggctgc tccctctctt tttggtggaa 1681 ggagagccgg cttgagtggt ttgggcggac gtaatcgctt taagttaacc agggctgaag 1741 gtggcagcac caccactagc accactgagg catcggtggc tgcagaaaca aacaagactg 1801 gtagaaatcg tttttcgcgc ccctcgatag gagggcgttc tcgacccgga gctcgtacca 1861 ccacagcacc agatgccaca tcagtagctg cccctgacgc cgaggagggt atagtggttg 1921 ccaaggaagt caagcctgtc agtacgtcct tcgcacgagg aagacctcgc aaccgcttca 1981 gcttgcgcgt ctcaaccacg actgcgcgac ccagcgagga atctccagct gaagatgacg 2041 cccccgccga atcttcatca acgactacaa gaagcacatt gaggggtcgt cccggacttg 2101 gattacgtgg acgcagtcgt acaaccacta caaaggcacc cgctagttca gagggtgccg 2161 aagcggtaga gcctaatgcc actgctagtt ccgaagacgt caagtccggg ttgatttcgc 2221 cttctaccgg ggaatcaggg cgtccgtccc gttttaacat tcaccgcgct ggtagcaatc 2281 gtctgttatc ccgcggaaaa ctgggaagat cgggagtaag cacggaagca cccaaggaaa 2341 gtcaaactgc cgaggattcc gccgccgaaa gcagtagtca cctcaacgac gtcaaagagg 2401 agcagatgtc cgctggcgag tttagcgaaa agacgaacga agcaggtgat tccgctgccg 2461 tcgttccagc ggctcctgta tccgggttaa atcgtcttag aactcgacca cgtctcaacg 2521 ccctaacgca taagactgat gcggttaagc ctaaggcatc cgcagccccc gcccccgcgc 2581 caaggaagat taatcctctg ttggcaaagc gacgactcca actgggagcc acttccacca 2641 cagagtcccc cgctgaggag gagcatttag cgctggactc ctccgcggag cagtccgaca 2701 aagaggagtc gtttgccgga ggaagcaacg agacgggcgg agaaggcccc ggaaagccgg 2761 agcatgaaac tacggaagcg acggaggcaa caactaagca gcagccccgc ggtcttggac 2821 ttttaggaca gcgtcgtcgt ctgccgctcc gcaaacccgg aacgatcctg taaaacaaca 2881 aattgccatc tacccgtttg aatcctgtaa taataacttg cccagatttg ctgcagcata 2941 ctcctagagt tgggctgggt ggcccacaca agcgataata acatttaaca attgtttgat 3001 atatgtactt ttttttaagt ttttttctcc tcgtacttgc cttccaaaaa ctcgttagct 3061 ttgtacacat acgcctttaa ttaaaatact gatagatgcg taccacttac gtcattagaa 3121 aaagtcacca aaaggaaaaa tatggacgac acaagaacga ggagatctaa gccactcgta 3181 gaccactaag cacaaaatac ccgaaaaata taactgatat gattgccaac taccctgcga 3241 ctatgtaaac ccaaccttcc cccctccttt accctcttat tcaaatcgac gcgtgtgtag 3301 aagatacact tattatattt tttttctgag atacaattat aaacacaaaa acgactttta 3361 actatatatt aaataaaaac aaaaggaaaa acataataat tt