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LOCUS NM_166840 3376 bp mRNA linear INV 26-DEC-2023 A (CG3777), mRNA. ACCESSION NM_166840 VERSION NM_166840.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3376) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3376) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3376) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3376) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3376) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3376) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3376) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3376) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3376) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3376) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3376) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3376) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3376) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3376) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3376) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3376) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_166840.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3376 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3376 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /map="1A1-1A5" /db_xref="FLYBASE:FBgn0024989" /db_xref="GeneID:30979" CDS 208..2847 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /note="CG3777 gene product from transcript CG3777-RA; CG3777-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_726664.2" /db_xref="FLYBASE:FBpp0070066" /db_xref="GeneID:30979" /db_xref="FLYBASE:FBgn0024989" /translation="MLLKVFLLVFIATHHLVDSAGPLSNIASESKPKSFEEILPSAVP FETSHKHPGAGEWVEGFQTSHKISIRATDSADYSMNLLPTKERPELNPVLSALINEDV MKSIEAKRAIEEEELAEVRREIEQAAVLELAQKRGFTTTETPALLLTTLPTAGKKLDN LDEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPNGQDYEYEYVYYYEEDDDS SKVDPSAEPDTRGKTRYTNIERSTTATPSGNSLQSDKAKGRSSDTSEDIEAERLPMIT RFPSRGKNIEVPPTAALDSLEIAAERKKISVKRPSLELVDSATFNTDEKQTKAARKGE NELKPVIAIEQEEAARKKMQQVKEEQARKEKETEMSIDQEDFEQTTPSMEKAALDLYA ILTNENLNNEQTTVIPDTVGSEGFTTLATETASTDEDEAGVMTTLINEISSSTSTTTT AATTTTTTTTTEPPTTTSTTTTTTAAPSLFGGRRAGLSGLGGRNRFKLTRAEGGSTTT STTEASVAAETNKTGRNRFSRPSIGGRSRPGARTTTAPDATSVAAPDAEEGIVVAKEV KPVSTSFARGRPRNRFSLRVSTTTARPSEESPAEDDAPAESSSTTTRSTLRGRPGLGL RGRSRTTTTKAPASSEGAEAVEPNATASSEDVKSGLISPSTGESGRPSRFNIHRAGSN RLLSRGKLGRSGVSTEAPKESQTAEDSAAESSSHLNDVKEEQMSAGEFSEKTNEAGDS AAVVPAAPVSGLNRLRTRPRLNALTHKTDAVKPKASAAPAPAPRKINPLLAKRRLQLG ATSTTESPAEEEHLALDSSAEQSDKEESFAGGSNETGGEGPGKPEHETTEATEATTKQ QPRGLGLLGQRRRLPLRKPGTIL" ORIGIN 1 tgccatttca cgttcagcta gcagcgaaat cgaaagtgac tgctccccga agatccgaag 61 ataaaataaa tttagagaga agctgaagca cgcagttgac tttcaaaagt gtcattaaaa 121 tctatgaaaa atcgcagtta gcgaaaaagt tgctgtagca gcattgaagt cgcctaggag 181 caacaagaac aacaatcaca tctcaaaatg cttctcaagg tatttttact ggtcttcatc 241 gccacccacc acttggtaga ctcagcgggt cccctttcca atatagccag cgaaagtaaa 301 ccaaaatcgt tcgaggagat tttgccttcg gcggttccct ttgagacctc acacaaacat 361 ccgggtgccg gggagtgggt ggagggattt caaacctccc ataaaataag cataagggcc 421 accgattccg ctgactattc gatgaatctg ctgcctacta aagagcgacc cgaattgaac 481 cccgttttga gtgcacttat caacgaagat gttatgaaga gcatcgaggc caaaagagcc 541 atagaagaag aggagctggc cgaggttagg cgtgaaattg agcaggccgc cgtgttagag 601 ttggcccaga agaggggctt taccactact gagacacctg ctcttctgtt gacgactttg 661 cccacagctg gcaagaagct cgataacttg gatgaggaca tagtcctgga tcctcacgaa 721 gattttatca accaaaattt tgccctggag agtgcgggta gtgagaacag caagaaatcc 781 cgaatagaga ttaaaaaggg acccaatggc caggactacg agtacgagta tgtctattac 841 tatgaagagg acgatgactc aagcaaggtg gatccatctg cagagcccga cacgcgtggt 901 aagactagat ataccaatat cgagaggagc acgacggcca ctccgagtgg aaatagccta 961 cagagtgaca aggccaaagg aagatcatct gatacctctg aagatataga ggctgaacgg 1021 cttccgatga tcactcggtt tcccagtcgt ggcaagaaca ttgaagtgcc accaacagca 1081 gctcttgatt ctttggaaat cgctgccgag cgcaagaaga ttagtgttaa gcgccccagt 1141 ttggagttgg tggatagtgc taccttcaac acggatgaga aacagaccaa ggcagctcgc 1201 aagggtgaaa atgaattaaa accagtaatt gctatcgaac aggaggaggc agccagaaag 1261 aaaatgcaac aggttaagga ggagcaggca aggaaagaga aggagaccga aatgtcaatc 1321 gatcaggagg attttgagca gaccacgccg tccatggaga aggccgctct agatctttat 1381 gccatattga ccaatgaaaa cctcaataac gaacaaacta ctgtaattcc ggataccgta 1441 ggttcagagg gtttcaccac tttggcaaca gaaactgcaa gtactgatga ggatgaggcc 1501 ggtgtcatga ccacgctgat taatgagatt tcatcgagta ccagcaccac tacgacggca 1561 gcaacaacca ccacgactac aacaacaacg gaaccaccta caacaacctc caccactaca 1621 acaaccacgg ctgctccctc tctttttggt ggaaggagag ccggcttgag tggtttgggc 1681 ggacgtaatc gctttaagtt aaccagggct gaaggtggca gcaccaccac tagcaccact 1741 gaggcatcgg tggctgcaga aacaaacaag actggtagaa atcgtttttc gcgcccctcg 1801 ataggagggc gttctcgacc cggagctcgt accaccacag caccagatgc cacatcagta 1861 gctgcccctg acgccgagga gggtatagtg gttgccaagg aagtcaagcc tgtcagtacg 1921 tccttcgcac gaggaagacc tcgcaaccgc ttcagcttgc gcgtctcaac cacgactgcg 1981 cgacccagcg aggaatctcc agctgaagat gacgcccccg ccgaatcttc atcaacgact 2041 acaagaagca cattgagggg tcgtcccgga cttggattac gtggacgcag tcgtacaacc 2101 actacaaagg cacccgctag ttcagagggt gccgaagcgg tagagcctaa tgccactgct 2161 agttccgaag acgtcaagtc cgggttgatt tcgccttcta ccggggaatc agggcgtccg 2221 tcccgtttta acattcaccg cgctggtagc aatcgtctgt tatcccgcgg aaaactggga 2281 agatcgggag taagcacgga agcacccaag gaaagtcaaa ctgccgagga ttccgccgcc 2341 gaaagcagta gtcacctcaa cgacgtcaaa gaggagcaga tgtccgctgg cgagtttagc 2401 gaaaagacga acgaagcagg tgattccgct gccgtcgttc cagcggctcc tgtatccggg 2461 ttaaatcgtc ttagaactcg accacgtctc aacgccctaa cgcataagac tgatgcggtt 2521 aagcctaagg catccgcagc ccccgccccc gcgccaagga agattaatcc tctgttggca 2581 aagcgacgac tccaactggg agccacttcc accacagagt cccccgctga ggaggagcat 2641 ttagcgctgg actcctccgc ggagcagtcc gacaaagagg agtcgtttgc cggaggaagc 2701 aacgagacgg gcggagaagg ccccggaaag ccggagcatg aaactacgga agcgacggag 2761 gcaacaacta agcagcagcc ccgcggtctt ggacttttag gacagcgtcg tcgtctgccg 2821 ctccgcaaac ccggaacgat cctgtaaaac aacaaattgc catctacccg tttgaatcct 2881 gtaataataa cttgcccaga tttgctgcag catactccta gagttgggct gggtggccca 2941 cacaagcgat aataacattt aacaattgtt tgatatatgt actttttttt aagttttttt 3001 ctcctcgtac ttgccttcca aaaactcgtt agctttgtac acatacgcct ttaattaaaa 3061 tactgataga tgcgtaccac ttacgtcatt agaaaaagtc accaaaagga aaaatatgga 3121 cgacacaaga acgaggagat ctaagccact cgtagaccac taagcacaaa atacccgaaa 3181 aatataactg atatgattgc caactaccct gcgactatgt aaacccaacc ttcccccctc 3241 ctttaccctc ttattcaaat cgacgcgtgt gtagaagata cacttattat attttttttc 3301 tgagatacaa ttataaacac aaaaacgact tttaactata tattaaataa aaacaaaagg 3361 aaaaacataa taattt