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LOCUS NM_144269 2487 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_144269 VERSION NM_144269.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2487) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2487) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2487) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2487) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2487) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2487) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2487) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2487) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2487) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2487) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2487) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2487) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2487) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2487) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2487) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2487) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2487) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_144269.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2487 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2487 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /map="5E3-5E4" /db_xref="FLYBASE:FBgn0040918" /db_xref="GeneID:50392" CDS 638..1840 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /EC_number="2.3.1.24" /note="CG3576 gene product from transcript CG3576-RB; CG3576-PB; schlank-PB; longevity assurance gene 1; Psc" /codon_start=1 /product="schlank, isoform B" /protein_id="NP_652526.1" /db_xref="FLYBASE:FBpp0070899" /db_xref="GeneID:50392" /db_xref="FLYBASE:FBgn0040918" /translation="MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLI WPIPFAAVVMLVRYTLERFWISPVGKSLGIRSSRPKKAANVPILEKTYAKSTRLDKKK LVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCENTWRCIYYLYSFIFGVIVLWDK PWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDVKRKDFWQMFIHHMV TLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQKLCDAIFAIFTVVWI VTRLGFYPRIIYSSSVEAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSLQ KGLMSGDIRSSDSEDLTDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAGSRAGARV ATTERREE" misc_feature 860..1030 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(860..871,875..877,926..928,944..946,983..985, 989..994,1001..1006,1010..1018,1022..1027) /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(863..865,872..874,992..994,1001..1006,1013..1015) /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1040..1639 /gene="schlank" /locus_tag="Dmel_CG3576" /gene_synonym="CerS; CG15898; CG3576; Dlag1; DLag1; DLAG1; Dmel\CG3576; Iag1; l(1)G0061; l(1)G0365; l(1)G0489; lag1; Lag1; lon; Schlank" /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC; smart00724" /db_xref="CDD:214789" ORIGIN 1 tgcagttaca tttactgctc cgccgtctct gggcacactg tattgttgtt gctcgacgag 61 gaaatactat tagtattttt tttcgttcat cctgaaagtt taagtggacg aaacgagcgg 121 cggccgactc gacaccgagc cgaaattcag aaagtctatt gctttggtcg agaacagatt 181 gtcagggaac ttcacttcat ttacgctccc aaacaaacgg caaaggtagc atttccaaaa 241 acgaattaaa tcgaaatcca aatagaaata gaagtagaat tagaaaagcc ataagcgcaa 301 gttaacgaga caagacaaca acaattcgat tcggcggttt ttgttttttt gccagtgtgt 361 gtttgtgcta cgctgtgagt gtgcattagt gtccggtgct cctgttgttg ttcttgttgc 421 tgttgttgtc gcttattgtt gttcttgctg ttattgttgc tgttgttcgc aaggcacaat 481 aacacaggct catacaattg cgaatattta gaaaaagcaa agcatataca tatgtgacaa 541 caaacgccaa ggaaaaactg gaaagctaag caaaggaaaa ccaagaaaaa gaaaacaaac 601 aattgagaaa ttaagaagcg gcaactgaag cagcaacatg gacatattga atgagttcag 661 caatgtattc tggagtacgc acatttggct gccgccgaac acaacctggg cggacattgc 721 gcccggctcg cgtccagatg tggtgcacgc caactacaag gacctcatat ggcccattcc 781 attcgccgct gttgtcatgc tggtccgcta cacgctggag cgtttctgga tatcgcccgt 841 aggcaaatca cttggcatac gtagttctag gcctaagaaa gcggcaaatg ttcctattct 901 ggagaagacc tatgccaaat cgacgcgatt ggacaagaaa aagctggttc cgctgtccaa 961 gcagacggat atgagcgagc gcgaaatcga gcgctggtgg cgtctacgca gggcccagga 1021 taaaccgtca acgctggtga agttctgcga gaacacgtgg cgttgcatct actatctgta 1081 cagcttcatc tttggcgtga tcgtgctgtg ggacaagccc tggttttggg atgtgaagag 1141 ctgctggtac ggctacccgc atcagtcgat cagcaatgat atctggtggt actacatgat 1201 ttcgatgtcc ttctactggt cactcactgg cacccagttc ttcgatgtga aacgcaagga 1261 cttctggcag atgttcatcc atcacatggt caccctgctc ctaatgtcgc tcagctgggt 1321 gtgcaatctg catcgcgtcg gttcgctcgt cctagtcgtt cacgattgtg ctgacatctt 1381 cttggaggcc gccaaactca ccaaatatgc caaatatcag aagctctgcg atgcaatctt 1441 tgccatcttc acagtggtgt ggattgttac gcgtctgggc ttctatccac gcatcattta 1501 tagctcatcc gtggaagcac cgcgcattct gcccatgttc ccagcctact acatcttcaa 1561 ctcactgctt ctgatgctgc tcgtcctgca cgtcatctgg acatacatga tcctcaagat 1621 tgttgtcgac tctctgcaga agggtctgat gtccggtgac atacgttcca gtgatagtga 1681 ggatctcaca gacagttcgg ggaatgcacg tctgaccaat ggctcggcgc gctccaagaa 1741 caagtcgatc agcagtgcgc catcggataa aggatctgcc ggaggagcag gatcaagagc 1801 aggagcaaga gttgcgacaa cggaacggag agaggagtag ctgagacacc agtaccacta 1861 gtaggggcca cacttcccgg gagcaggcgc agcaacaaca gcaaacaaac aaaatccaca 1921 cacaccccaa aaaagcacac accacgaaca cacacaccac acacactcac gcacacagac 1981 gcatacaaaa aaaccaaacc agttcagaat gtttttatgt tattattttt ttttatatat 2041 acatcttttt taaggtaaac aaaaaagaaa gaaacaaatc gaaaaccaaa agaaatttaa 2101 ataaatgcga gaaaattgat gcgtaacgat tcgcttgtac atcgttattg attaaaacta 2161 ttactattac tattactatt actatatgcc tcacagtttt ttttttgttg ttgtttgtct 2221 tgcttaacca aaaaaaaaaa aaacaaaagc aaaagcaaag agacgaagga gaaaataacg 2281 ttaaatataa ccatttaaac gtaaagctaa agttaagtta ttttaccaaa cgaaatggaa 2341 gttagcacag tgggactaaa ccaaaatcgc ttaggcaaga attcaataga cgaagagtaa 2401 aaaatgaata gtagtcaaaa ctattgtaaa tactgtactt gtatgtttcc catattaata 2461 aatttatgct aaacaaatta caagacc