Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_143755 2170 bp mRNA linear INV 26-DEC-2023 variant A (deltaCOP), mRNA. ACCESSION NM_143755 VERSION NM_143755.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2170) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2170) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2170) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2170) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2170) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2170) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2170) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2170) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2170) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2170) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2170) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2170) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2170) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2170) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2170) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2170) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2170) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2170) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_143755.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2170 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2170 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="Coat Protein (coatomer) delta" /map="2B12-2B13" /db_xref="FLYBASE:FBgn0028969" /db_xref="GeneID:45250" CDS 194..1792 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="CG14813 gene product from transcript CG14813-RA; CG14813-PA; deltaCOP-PA; delta-coatomer protein; archain; COPI delta subunit; coatomer complex COPI delta-COP subunit" /codon_start=1 /product="coat protein (coatomer) delta, isoform A" /protein_id="NP_652012.1" /db_xref="FLYBASE:FBpp0070355" /db_xref="GeneID:45250" /db_xref="FLYBASE:FBgn0028969" /translation="MVLIAAAVCTKNGKVILSRQFVEMTKARIEGLLAAFPKLMTAGK QHTYVETDSVRYVYQPMEKLYMLLITTKASNILEDLETLRLFSKVIPEYSHSLDEKEI VENAFNLIFAFDEIVALGYRESVNLAQIKTFVEMDSHEEKVYQAVRQTQERDARQKMR EKAKELQRQRMEASKRGGPSLGGIGSRSGGFSADGIGSSGVSSSSGASSANTGITSID VDTKSKAAASKPASRNALKLGGKSKDVDSFVDQLKNEGEKIANLAPAAPAGGSSAAAS ASAAAKAAIASDIHKESVHLKIEDKLVVRLGRDGGVQQFENSGLLTLRITDEAYGRIL LKLSPNHTQGLQLQTHPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRFVSQDES AVPLTINCWPSDNGEGGCDVNIEYELEAQQLELQDVAIVIPLPMNVQPSVAEYDGTYN YDSRKHVLQWHIPIIDAANKSGSMEFSCSASIPGDFFPLQVSFVSKTPYAGVVAQDVV QVDSEAAVKYSSESILFVEKYEIV" misc_feature 203..592 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="delta subunit of the F-COPI complex, N-terminal domain; Region: Delta_COP_N; cd14830" /db_xref="CDD:341434" misc_feature 1067..1780 /gene="deltaCOP" /locus_tag="Dmel_CG14813" /gene_synonym="63B12S; anon-WO03040301.246; Arch; ARCN1; CG14813; delta COP; Delta COP; delta-cop; delta-Cop; delta-COP; deltaCop; DeltaCop; DM63B12S; Dmel\CG14813; EG:63B12.10; ESTS:63B12S; l(1)G0051; l(1)G0301; l(1)G0450" /note="Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit; Region: AP_delta-COPI_MHD; cd09254" /db_xref="CDD:271162" ORIGIN 1 acactacccg aactcacaca aagccacggt aaacatttgt cgcagaaccg aacacgtcag 61 ctacggggat tgattgttaa acaacgtttc tatcgccccg caaatccgat ccgtagcagc 121 agtccatcct gcgccgtccg catccgatcc gcgaagtatt ttccagggca aaaacgtcaa 181 acgcagcagc aaaatggtat taattgctgc ggctgtctgc acgaagaatg gcaaagtgat 241 tctgtcacgt cagttcgtcg agatgacgaa ggcacgcatc gagggactgc tggctgcctt 301 tcccaagctg atgactgctg gcaagcagca cacttacgtg gagacggact ccgtgcgcta 361 cgtctaccag ccgatggaga aactatatat gctgctcatc accactaagg ccagcaacat 421 tctggaggat ctggagaccc tgcgcctctt ctcgaaagtg attcccgagt acagccactc 481 gctcgacgag aaggagattg tggagaatgc cttcaatctg atcttcgcat ttgacgagat 541 cgtggcactc ggctacaggg agagcgtcaa cttggcccag atcaagacct tcgtggagat 601 ggactcacat gaggagaagg tctaccaggc agtgcgtcag acgcaggagc gtgatgcgcg 661 ccagaagatg cgcgagaagg ccaaggaact gcagcggcag cgcatggagg ccagcaaacg 721 gggtggtccc tccctgggtg gcattggcag ccgcagcggc ggctttagcg ccgacggaat 781 tggcagtagc ggcgtgagca gcagttccgg tgcctccagc gccaacaccg gcatcacctc 841 catcgatgtg gacaccaaat ccaaggcggc tgccagtaaa ccagcttccc gcaatgccct 901 caagctaggt ggcaagtcca aggacgtcga tagtttcgtg gatcagctga agaacgaggg 961 cgagaagatt gccaatctgg caccggcggc gcccgctgga ggttccagtg ctgcagctag 1021 cgccagtgca gcggccaagg cagctatcgc gtcggacatt cacaaagaga gcgtacatct 1081 gaagattgag gacaagctag tagtgcgtct gggacgcgat ggtggcgtgc agcagttcga 1141 gaactcgggc ctcctgacgt tgcgcattac ggacgaggcc tacggacgca ttttgctgaa 1201 gctgtctccc aaccacacac agggcctgca gttgcagacc caccccaacg tggacaagga 1261 gctgttcaag tcgcgcacta ccatcggact aaagaacttg ggcaagccgt ttccccttaa 1321 caccgatgtg ggtgtgctca agtggcgctt cgtctcgcag gacgagtcgg cagtcccgct 1381 gaccattaac tgctggccat cggataatgg agagggtgga tgcgatgtta acattgagta 1441 tgaactggag gcgcagcagc tagagctgca ggacgtggcc attgtcattc ccttgccaat 1501 gaatgtgcag ccttcggtgg cggagtacga cggcacctac aactacgatt cacgcaagca 1561 tgtgctccag tggcacattc caataatcga tgccgccaac aagtccggtt ctatggagtt 1621 cagctgcagt gcctccattc ccggtgactt cttccccttg caggtgtcct tcgtctcgaa 1681 aacgccgtat gcgggcgtcg tggcccagga tgtggtgcag gtggacagcg aggcggcggt 1741 caagtattca agcgagtcca ttctgttcgt ggaaaagtac gagatcgtgt aggccgcgcc 1801 gctggccacg cccacctaag tagtacataa atatacataa tttcccgggg tcatccgatg 1861 cgatgcaatt aattcaactg ctgcagcatg ttgagaatta tttttccatg tgcgaacttt 1921 acatatttat ggcgcagaca gcttctcaga gcgagtaatt gattccaaaa aaaaaaaaaa 1981 aaacaccatc aaagccaatt aattaaacta attttgtgca ctccgctgcg ctgcatataa 2041 cggtatcaaa taaattaatt gcaattagtt gtaactggcg attgcagtgt tttgttttgt 2101 gtgcttcgtc gcaccccttc gatttgagta atttgtatgt agattgctat gaataaacca 2161 tatacaatat