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LOCUS NM_132687 3113 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132687 VERSION NM_132687.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3113) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3113) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3113) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3113) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3113) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3113) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3113) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3113) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3113) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3113) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3113) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3113) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3113) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3113) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3113) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3113) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132687.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3113 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3113 /gene="Mrgn1" /locus_tag="Dmel_CG9941" /gene_synonym="A; CG9941; Dmel\CG9941; dMgrn1; x93" /note="Mahogunin ring finger 1" /map="12B4-12B4" /db_xref="FLYBASE:FBgn0030514" /db_xref="GeneID:32330" CDS 302..2671 /gene="Mrgn1" /locus_tag="Dmel_CG9941" /gene_synonym="A; CG9941; Dmel\CG9941; dMgrn1; x93" /note="CG9941 gene product from transcript CG9941-RA; CG9941-PA; Mrgn1-PA" /codon_start=1 /product="mahogunin ring finger 1" /protein_id="NP_572915.1" /db_xref="FLYBASE:FBpp0073674" /db_xref="GeneID:32330" /db_xref="FLYBASE:FBgn0030514" /translation="MGNFVSRQNAAVEEADPSTNNAYKYPPRMGNFFGTHFIMGGERF DTPQPESYLFGENADLNFLGNRPTAFPYPPPQANEPTKTLKSLVNIRKESVRFVKTMN DKKLGGVLEKPKMKEIDRDLDLDKEKSNVTIEDVDGNVLCSMGLGGGDADMTPPPPPC SYNIEFTFDSDAKCAITIYYFCSEDVSPSGVTLVPREGLTSETYHYEKGINQCFSQPS HVFNPQQMPEDELGYSPGREQYPVAIHCVVEEGSDECRQSHTTICVIDHHPENGSYVL RALKQKIFVDGLCYLLQEIYGIENKAVNKTSLDEEIDDHGSECVICMSETRDTLILPC RHLCLCNSCADSLRYQANNCPICRAPFRALLQIRAVQKGISTHVLHQNTPTSAAGEPA PVDVPPGYIPVSLIEALNGPPQYVARARNSEHDVTDSAATVAASTMTSADIKATSPIK SSSQRRPKIKKNASTCTSTSEVGTITNQSGGGNGSSTHSVEIESDPKKSSTATCTSPT LGASTSPEPKQDKLQIVNERKYPRSTAGSGGDGSAGTDDDVDSENEKLSPLLSPGSKS KNVSSKSLKQVVACLEADDDVDNKSSTGDGPTEESSLKKGSSIKRTKPRPELSGSGAP SPAEATAEDSDYYTPEDTQNSILSPLCPTERAKSGDPLGAGSLGNGGLSVGRSAGSVG GQAGVGPVVVGFSSAVKKNLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPI SGNSASTRSSSDSYSSSSSTKQLLSSNPTTTAANIIVDDKTALQNAVNV" misc_feature <1064..1378 /gene="Mrgn1" /locus_tag="Dmel_CG9941" /gene_synonym="A; CG9941; Dmel\CG9941; dMgrn1; x93" /note="RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]; Region: PEX10; COG5574" /db_xref="CDD:227861" misc_feature 1241..1417 /gene="Mrgn1" /locus_tag="Dmel_CG9941" /gene_synonym="A; CG9941; Dmel\CG9941; dMgrn1; x93" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(1256..1258,1265..1267,1301..1303,1307..1309, 1319..1321,1328..1330,1361..1363,1370..1372) /gene="Mrgn1" /locus_tag="Dmel_CG9941" /gene_synonym="A; CG9941; Dmel\CG9941; dMgrn1; x93" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN 1 aaagaaagga agaaagaaga aaggaaaggc aaatcagaaa taatcaagac attgaccaac 61 ttgtactatt gctagttttg tggacacagg atccaacact tgaaggcgac cacagctttc 121 gcacactcac acacacacag cggccatttt ccgccgaaca agtgaaatgc caacatgcca 181 ttgtatgtgt ggtggtgacc aactgaaata gaataataaa ctaaaccaaa gcgaagagaa 241 aacgtaggcc aagagctata ttggatctgt gtcacagttt tccatagcac caacctatca 301 aatgggcaac tttgtgagca gacagaacgc ggcggtggag gaggccgatc cgagcacgaa 361 caatgcctac aagtatccac cgagaatggg taacttcttt ggcacccact tcatcatggg 421 cggcgagcgc ttcgacacgc cccaaccgga atcgtacttg tttggcgaga atgcggatct 481 caatttcctg ggcaatcgac ccacagcctt tccgtatccc ccgccgcagg ccaatgaacc 541 gacgaagacc ctgaagagtc tggtcaacat tcgcaaggag tcggtgcgtt tcgtcaagac 601 gatgaacgac aagaagctgg gcggtgtact cgagaagccc aagatgaagg agattgatcg 661 ggacttggat ctggacaagg agaagtccaa cgtgaccatc gaggatgtgg atggaaatgt 721 gctctgctcg atgggtttgg gtggcggtga tgccgatatg acgcccccac cgccgccctg 781 ctcttacaac atcgagttta cctttgactc ggacgccaag tgcgccatta ccatttacta 841 tttctgctcg gaggatgtca gtcccagcgg cgtgacactg gtgccgcgcg agggtctcac 901 ctcggagacg taccactacg agaagggcat caatcagtgc ttctcgcagc cgagccatgt 961 cttcaatccg cagcagatgc ccgaggatga actgggctat agtcccggcc gtgaacagta 1021 tcccgtggcc attcactgtg tggtggagga gggcagcgac gagtgtcggc aatcgcacac 1081 caccatctgt gtgatcgatc atcatccgga aaacggcagc tatgtgctgc gtgcattgaa 1141 gcaaaagatc tttgtggatg gcttgtgcta cctgctacag gagatctatg gcatcgagaa 1201 caaggccgtg aacaaaacgt ctctggacga ggagatcgac gatcatggca gcgagtgtgt 1261 tatttgcatg agtgagacga gggatacgct catcctgccc tgccgccatc tctgtttgtg 1321 caattcatgc gcggattcgc tgcgctatca ggccaacaat tgtcccattt gtcgcgctcc 1381 gtttcgggcg ttgcttcaga tccgtgctgt ccagaaggga attagcacgc atgtactgca 1441 ccagaacacg cccacatcgg cggccgggga gccggcgcca gtggatgttc cgccaggcta 1501 tattccagtc tcactaattg aggcactcaa cggaccgcca cagtatgtgg ccagggctag 1561 gaacagcgaa cacgatgtca cggactcagc tgccaccgtg gccgcttcga caatgaccag 1621 tgctgacatc aaggccacat cgccgatcaa gtccagcagc cagcgtcgac cgaagatcaa 1681 gaaaaacgct tcgacgtgca cgtcgaccag tgaggtgggc accattacca atcaatcggg 1741 cggcggcaat gggtcatcca cacactctgt ggagattgaa agcgatccga agaagtccag 1801 cacggccacc tgtacttcgc caacattggg ggcatccact tcgccggaac cgaaacagga 1861 caagctgcag attgttaacg aacgaaagta tcccagatcc acagccggtt ccggtggcga 1921 tggctccgcg ggtaccgatg acgatgtgga cagtgagaac gagaagctat cgcctctgct 1981 atcacccggc agcaagagca agaacgtttc tagcaaatcg ctgaagcagg tggtggcctg 2041 cctggaagcg gatgatgatg tcgataataa gagcagcact ggtgatgggc cgaccgagga 2101 gtccagccta aagaagggtt cgtcgataaa gcgcaccaaa ccgagaccag aacttagcgg 2161 aagcggtgca ccctcacccg ccgaggccac ggccgaggat tcggattact acacgccgga 2221 ggatactcag aattcgatat taagcccact gtgccccacg gagcgagcca aaagcggtga 2281 tccccttggc gccggcagtc tgggcaatgg cggtctcagc gtgggcagga gcgcaggatc 2341 agtgggcgga caagctggag tgggacccgt cgttgtgggt ttcagtagtg cagttaagaa 2401 gaacctgcac aaaaagtcca catcggtggg caacatggtg ggctccggat cggtgacaac 2461 ggttgtggac ttgaagtcca acaacgtaag ctccctgcca gacatgttgg acagcccaat 2521 cagcggcaac tcggcctcga cgcgcagctc cagtgatagc tactcctcca gttcgtccac 2581 caagcagctg ctcagctcca atccgaccac tacggcggcc aatattatcg tagatgacaa 2641 gacagctctg cagaatgccg tcaatgttta gagccggtct cggttgaatt tcgcggaaat 2701 tcgttttctc gttttagctt tgcgtttata ctatttattc ggagttcacc tagatttagt 2761 taaatcaatg ctgcttcccc gctcgcagga acaaatattt tgaggattat attaatatta 2821 atattaatgg taatgctaat gatgatgatg atgatgatga tgataatgat aatacggata 2881 aggatggaac ggaggaggag caaggaataa ggctaccagg acgcaacact taaccagtat 2941 acacagtata tacatacata caaacactaa caccacagac acgaaaagac acacgtccca 3001 catgcatgtg tgtgtatgta gtttaatcta gtataatggc ttgggtatat aacaaataaa 3061 ataaatccaa taaacaacgg cgcctagggc gctacattcc acagtataat tcg