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LOCUS NM_132676 2955 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132676 VERSION NM_132676.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2955) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2955) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2955) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2955) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2955) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2955) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2955) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2955) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2955) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2955) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2955) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2955) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2955) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2955) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132676.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2955 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2955 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="toothrin" /map="12A8-12A8" /db_xref="FLYBASE:FBgn0030502" /db_xref="GeneID:32318" CDS 424..1710 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="CG12175 gene product from transcript CG12175-RB; CG12175-PB; tth-PB; anon-fast-evolving-2G7; toothreen" /codon_start=1 /product="toothrin, isoform B" /protein_id="NP_572904.1" /db_xref="FLYBASE:FBpp0073680" /db_xref="GeneID:32318" /db_xref="FLYBASE:FBgn0030502" /translation="MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSE RRHRLPFLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKMYS RFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSLTLNMLTGGGA APAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKDSQQQQHQQHQHQQQAVKE ELLPKEWFYDDMDMNDVDSLEEPKSPADDEYDYDPRYGNKKRRKRRPGKRGGDSGGGG GGGGAGGGGNSGGSSSSRRRSAAARSRITTTDAALDASLEAIESGESVPGSNGGPISS GGILSGSLGAGLAGVSGSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDP TSPGMVIEPPSFESAAAAVGVVEDANAHLRNYRKYL" misc_feature 493..690 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="DPF1-3, N-terminal; Region: DPF1-3_N; pfam14051" /db_xref="CDD:464074" ORIGIN 1 gggggaaaat catgtcgcca tctggtaaca ctggcattca gcagagcagt gaaaacgacg 61 ttaatatttc tgatcaatta aacaattgga aaatccggcc gcagatcgcg atctaaacgt 121 atcgccctcg ccacgcccac tgccgcccac gccccctggc gcggggtcac atcgatagag 181 agctttgcgt gtgtgtgtgt gtgcgtgcgt gtatgtgtcg gtcgagagga gaggtggaag 241 acgaagaaga ataaaaaaaa caggcagcga aaagcgataa gaaacggaac acaacacact 301 ggaaaaaaat tgcgataaga aacggggcgg agcggagcgg aaattgccaa gactctggga 361 tggattagcg gcacagccgg actctgaggt tagccaacag tgggattagg accaggaaca 421 gccatgtcct ccgccgttaa catccagatc gtctctatgc cgaatctggc caagatcgag 481 agcttcctga aggatgtcag ctaccgggag acgatcgagt acagtgccaa cttcaacacg 541 cgcctgtgca gcgaacggcg ccaccggctg cccttcctcg atccgcagac aggcgtcgcc 601 cagaaccact cgcagctctt cctggacaag cgacagcgga tgcccggctt ccggcagggc 661 cagatctaca cgtatccggc ggcccgctgg cggaagagcc gtcgtcagta cttgagcaag 721 atgtacagcc gctttcccga gcgtcccttc caggcgctac gcaaggagca cgaagctctg 781 gtggccagcg gcgtcaatct gggactgagc agcctgacca gcggtgtggg ctccatgccc 841 ggcagcaata gcctggccag cagctcctcc ctaacgctca atatgcttac gggcggcgga 901 gccgcgccgg ccgtacttgg ttccctgcac agtgacactg cccacgattt taatggagcc 961 ttcagcctgg aggagtccag ctcgctgggt gccgccggcg gtgatacatc cgacagcaag 1021 gacagtcaac agcaacaaca tcagcagcac cagcaccagc agcaggccgt caaagaggag 1081 cttttgccca aggagtggtt ctacgatgac atggatatga acgatgtgga ctcgctggag 1141 gagcccaaat cgccggcgga tgatgagtac gattatgatc cgcgctatgg taacaaaaaa 1201 aggcgcaagc ggcgaccagg caagcgaggt ggagattccg gcggcggtgg tggtggagga 1261 ggcgccggcg gtggcggcaa ttccggcggt agctccagct cgcggagacg cagtgcagcg 1321 gccaggtcgc gtatcacaac gacggatgcg gcgctggacg catcgctgga ggccattgaa 1381 tctggcgaga gtgtgccagg cagcaatgga ggaccaatct ccagcggagg catcctaagc 1441 ggcagcctgg gagcaggctt agcgggagtt tcgggatccg gcggcggagg aggagcatcg 1501 ggagcttcgg ccaacagccg cagatcgcgg ggagcgggaa cacgtggcag gcgacgagcc 1561 aaggggccaa atagcgccgt tggagcgtct tgcgatccga caagtcccgg catggtcatc 1621 gagccaccat ccttcgagag tgccgctgct gcggtgggcg tggtcgagga cgcgaacgcc 1681 catctgcgca actatcggaa gtatctgtaa ccgctctatc agcaactaac tggacgtgta 1741 atcaatcaaa gccttgtttt tcgcaatgtt ttctcgccta ttgaatcgac ctactttttc 1801 gcacataatt taaatatagt ttttaagcct tagttgatca ctgtttgttg cccccctccg 1861 acaaaaggat aaaagccaag caagaaatga aagaaaggaa acaaatacat tgtggaccag 1921 ggacagaaac aggattagaa tcaggataac gatcagaacc gcgcaccagg ccgtagccaa 1981 tacaattcca atgtttcgcc tctcttaact ttacgttccc atagccaatt gattgttgtt 2041 ttttaaacta gcaatggact ggtgaacttc tactatagga taacttgagc ggaaacttat 2101 ggatgtagca aatattcttc gagcaatttt gtaatgtagg aaacccttta ggccatcaat 2161 tattaacgtt gtataagtta gacaatgaat ttaaaaagaa cctttttcgt catcgttagg 2221 caattcgtaa tcaattattt tcgggcatca tctatgccat aagtgaaaca gcacaatttg 2281 aactatgtat agttttgcaa tacacgacta tatttcacat ctggtttccg aagttttgct 2341 tagagcagtt cgccagacca ttgcattata ttgtacatta tatatatggg tgtacagaca 2401 ttatatacat atatatatat atacatactt gcatgcattg tatttgcgac tctacttaag 2461 gcaagtccac cttttggact ggctctccac ctaatcgcaa tctctcggtt tctgttgctg 2521 catgttctta atactatttc acctagctcc ccacccctcc ccacatatta tattcaattt 2581 tttttattta accaaaattt tagttaaaaa agagacaatt cagattgtaa tctatttagg 2641 caagtggtag ggtatctcta gcattagaag aagctaaaag taaaaacaat ttcgtaaaac 2701 caaaattttt tctctaggat cataattatt aagctgagct aaaaacgaaa acaaatttta 2761 actaactaag aagggacaaa attgaaataa gatcaaaaaa ggaaaacatg tacattttgg 2821 aagaaaaatc aaagtccaca aaattttaac gaatgagagg caaaaaatca gacaaaaatg 2881 aaccacaaga gaatgaaaaa aaaaaacaaa aatggaaata ggtttctaag atgttttaat 2941 atattttgta ataac