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LOCUS NM_132673 3043 bp mRNA linear INV 26-DEC-2023 B (CG11178), mRNA. ACCESSION NM_132673 VERSION NM_132673.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3043) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3043) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3043) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3043) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3043) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3043) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3043) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3043) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3043) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3043) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3043) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3043) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3043) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3043) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3043) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3043) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3043) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3043) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132673.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3043 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3043 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /map="12A8-12A8" /db_xref="FLYBASE:FBgn0030499" /db_xref="GeneID:32315" CDS 302..2425 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /note="CG11178 gene product from transcript CG11178-RB; CG11178-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_572901.1" /db_xref="FLYBASE:FBpp0073636" /db_xref="GeneID:32315" /db_xref="FLYBASE:FBgn0030499" /translation="MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNEC PSGWKYLPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRTAD LTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKAYQQLNACLQD DESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRVVCFGSPVRQMCVLILGMA SLVPRLLEKGFQEVACVRTSRPLSPMPDFTDSLQREAQAEAEAELEAVASVAAATDEQ KLTPESATAVEGEAEELALVSSAASAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLT REASVDTLASNLAALCAVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVI GTSNVLFQQKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQCFQEWYDVR PEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKINQAVNTTSRAVGGAISQ AKGAFSSWWSSITTAPPNATNAGPATSSSNGQEGDVSEGAAAQEISVTFQNHKDVEDL DVAGVSIHLAGQEEAHESHESQSVSCDKPQGIVEIGREAELLDKTAQSEEPKIAAASQ AGRPGCGGDVATSAVERSSGDVFIV" misc_feature 332..1720 /gene="CG11178" /locus_tag="Dmel_CG11178" /gene_synonym="Dmel\CG11178" /note="Transport protein Avl9; Region: Avl9; pfam09794" /db_xref="CDD:430832" ORIGIN 1 ttggagtaca aaataacgcc tcctgatatc gatacgctat cacaaacaag aaaatagaat 61 aaaaacaaaa tcgcttggaa atcgtaaaga aagaaagtta aatacgacag atagataatt 121 gcaacacaaa ataagtgcgc cgtggtccga atagaacaac aattgcgtgg cgtggttaca 181 cgagtgcgag cgagagggcc gatgtggtag tggccaatcc aattggatat tcattttgca 241 ggcaaaaaac gcattttttg tggacaccgc ttgctccttg gtacaaggat aacgaccaac 301 gatggccagc gagccggaga acaagccacc gatcctgcac atcctcgtgg tgggcttcca 361 ccacaagctg ggctgccagg tggagttctc gcatccgccg ctaatctcgg gctccacggg 421 acgcaacgaa tgcccctccg gctggaagta cctgcccact ctggctctgc ccgacggctc 481 gcataacttt gccgaggaca cggtgttctt caacctgccc agtttgtatg agccggctga 541 gagtatctac ggcgtgtcct gctatcgcca gatacgcgtg gagaagctaa agatccggac 601 agcggacctc acgcgcagca ccgttcagaa gtccgtttgc atattggccc gcctgcccat 661 ctacgggtac atcgaggtga agctagccct cattgccgat gcctttttcg atcagggcga 721 cttctccggc acggaactgc tggccaaggc ctatcagcag ctaaatgcct gcctccagga 781 cgacgagtcg cgccgcccgt tgcgccactt tcacgtgggg ctgtcgctgc gcgagatcgt 841 actccactgg cgccacaaga cgctaatgct cttcaaacta atgctgctgc agcgacgagt 901 ggtgtgtttc ggttcgcccg tacgccaaat gtgtgtgctg atcctgggca tggcatcgct 961 ggtgccgcgg ctgctggaga agggcttcca ggaggtggcc tgtgtgcgca cgtcgcgtcc 1021 cctgtcgccc atgccggatt tcactgactc cctgcagcgg gaggcgcagg ccgaagccga 1081 agcggaactg gaggcagtgg cttccgtagc agctgccacc gatgagcaga aactgacgcc 1141 cgagagcgcc acagcggtgg agggcgaggc cgaagagctg gccctcgtct catccgcagc 1201 gtcggcgggc gaggagcagg tcagtggcga tgacacgtcg acgcgttcca cgcccaactc 1261 acagtcgcag gactcatcga acggcaggaa cagctcgctg accagagagg ccagcgtgga 1321 cacactagcg tccaacctcg ccgccttgtg cgctgtcaat ccggatgagt atcgggcacc 1381 ggtcagcatc ttcgccagcg gcaacctctg cctgccgtat ctgtcgctac cgtacatgga 1441 cctgctcagc gatcccatgg tgctctccta tgtcatcggc acctccaacg tgcttttcca 1501 gcagaaacgt cagctggctg acgtcctggt ggacatcgag gcggccaatc tggatgccca 1561 cgatccggag ctcaggcgtc agctggtgct gagcaccgag gatctgcgct acatggacta 1621 catcatgaag catgtgcaat cgccaaagga ggatgccgag ggcagcgagt actggatacg 1681 ggagcagttt cagggctata ttctcgcact cttgcgaact gctgtggctc cagatgccac 1741 gccaaaggac aacgatcatt tcaatgcgca cttcatgggc gccttcaagc gcacccaatg 1801 ctttcaggaa tggtacgacg ttaggcccga acccgagttc tttgaggccc tgcccgctgg 1861 tcatcccttc gccggcacct tgtccgtggc ggacatgaaa ctaaaactag cacaaaccat 1921 gcaaaatagc gagagtgggc gaaaaatcaa ccaggcggta aacacgacga gtcgtgcagt 1981 gggcggtgcc atatcccagg ccaagggcgc cttctccagc tggtggtcat ccatcacgac 2041 ggccccgccc aatgcaacaa atgcagggcc tgcgaccagc agctcgaatg ggcaggaagg 2101 ggatgtaagc gaaggagctg cagcccaaga gatctcagtt acattccaga atcataagga 2161 cgtcgaagac cttgacgtgg cgggagtcag catccacctg gctggccagg aagaggcaca 2221 cgagtcgcac gagtcacaga gcgtcagctg cgacaagccg caaggcatcg tcgagattgg 2281 acgcgaggcg gagctgttgg acaaaactgc gcaatcggag gagcccaaga ttgcggctgc 2341 aagccaagcc ggtcggccag gatgtggcgg cgatgtggcc acctcggccg tggagcgcag 2401 cagtggcgat gtcttcattg tctgaggacg ttagcactat cggggtcatt gtatagaatt 2461 gaactaagct aaatgatatt tatttattac acaacatatt gtctcagtct caatgttgaa 2521 tttataacta ctactcgaac ttccccccta tttttttgta tacccataca tattctgtag 2581 ttggttgact tgtggtacac agaaacctag gatttatgat cgagcgacaa tatactatga 2641 gatacatcac tactaattga aataatacct cattttcgtt tattttaagc ccaaaaatga 2701 caaaatatat atctacgaat acgaaaaaag cgcacacaaa tgaaatatcc aaattaatta 2761 atttaatagc aataaatgca aacgtttccc tgcaactttt ttgtggcaca agtcaatcgc 2821 acgctaaact acacaaaatt ggccaaatga taatattatt taatatttat agatacctac 2881 gcttaagtta cccttgccgt atttacccac cactcagtgt atacatatgt ataaccatgt 2941 aaagctaaac cgttccaagt gcaatttgta atcccaaaaa aggcagcgga gatccgtaat 3001 gaaatccgta atacgtgtgg caataaagaa cttaagaaat ctg