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LOCUS NM_132656 2510 bp mRNA linear INV 26-DEC-2023 (Bcat), mRNA. ACCESSION NM_132656 VERSION NM_132656.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2510) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2510) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2510) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2510) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2510) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2510) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2510) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2510) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2510) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2510) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2510) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2510) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2510) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2510) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2510) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2510) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2510) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2510) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132656.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2510 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2510 /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /note="Branched chain amino acid transaminase" /map="11F1-11F3" /db_xref="FLYBASE:FBgn0030482" /db_xref="GeneID:32297" CDS 373..1704 /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /EC_number="2.6.1.42" /note="CG1673 gene product from transcript CG1673-RA; CG1673-PA; Bcat-PA; branched-chain amino acid aminotransferase" /codon_start=1 /product="branched chain amino acid transaminase" /protein_id="NP_572884.1" /db_xref="FLYBASE:FBpp0073608" /db_xref="GeneID:32297" /db_xref="FLYBASE:FBgn0030482" /translation="MTTKMAINAKDIFRNQHRLIRFLEQSIRLCSNQSLKAAQAAQLQ QKSSADFEITASLDAQYTSAPEPIKHDKNLGHQFRASQISVRLAAPEQLQPKPDNDEE LGFGRLFTDHMLKIYYHKSLGGWQRPEITPLENLVMHPAAKVLHYAVELFEGMKAYRG VDGKIRIFRPDMNMNRMNLAAQRSGLPTFEGKEFVQCLSRLLSIDSEWVPHTDTASLY IRPTLIGIDPTLGVASSDSALLYTILSPVGSYFKTGSSGAVSLLADPSYVRAWPGGVG NRKMGSNYAPTINVQKEAAAKGLQQVLWLYGEDHQLTEVGTMNIFMFFVNDQGEQELV TPPLSGLILPGITRDSILRMTRQWGKFKVSEANITMPMVCELLNQGRLLELFGAGTAC VVSPVNRISYLGQDLYIPTMEQEKPVHELIRETLTDIQYGRVDHPWAVVID" misc_feature 784..1668 /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /note="Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The...; Region: BCAT_beta_family; cd01557" /db_xref="CDD:238798" misc_feature order(784..795,802..816,820..822,826..828,919..921, 1030..1032,1036..1038,1054..1062,1072..1074,1093..1095, 1213..1215,1228..1230,1234..1236,1246..1248,1288..1290) /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:238798" misc_feature order(811..813,826..828,898..900,1066..1068,1207..1209, 1222..1224,1312..1314,1408..1413,1540..1542) /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:238798" misc_feature 1207..1209 /gene="Bcat" /locus_tag="Dmel_CG1673" /gene_synonym="bcat; BCAT; BCAT1; cg1673; CG1673; Dmel\CG1673" /note="catalytic residue [active]" /db_xref="CDD:238798" ORIGIN 1 gctcatttct tgcagagact tcgtgccgtg aagatcgaac tgagaaaaga aaaagagcag 61 aagcagaagg gctgtagaaa gaaaaaaaga aagtaaatcc atacaccgaa ataaaacaca 121 actgcgtgct ttaagaattt tttttttact gtgcaaagtg cagcagttcc ttgctcatta 181 aactagaacc aagaaataca atatttaacg cgtcagttcg cgtaagtgcg gcaaagtgcg 241 agtgcaagag acgctaaacg agcgatacaa aaaaaaaaaa aaacggaaat ttcgtagagc 301 agcaaagcga gtccaaatcc aaaagtttct gaaagtaacg agacagaaga tttcgcagcc 361 aaattcaaca agatgacgac caaaatggca attaacgcaa aggatatttt ccgcaatcag 421 catcgcctga tccgcttcct cgagcagtcg atccggttgt gcagcaacca gtctctgaaa 481 gccgcccaag cggcacagtt gcaacagaaa tcgtcggcgg acttcgagat caccgcctcg 541 ctggacgccc aatacaccag tgccccggag cccattaagc atgacaagaa tctgggtcat 601 cagttccgtg cctcacagat ttccgtgcga ctggccgcac cggagcaact gcagcccaag 661 ccggacaacg atgaggaatt gggtttcggc cgcctattca ccgatcacat gctcaagatc 721 tactaccaca agagtttggg cggatggcag cgaccggaga ttacgccgct ggagaatcta 781 gtgatgcatc ccgccgccaa ggtcctgcac tacgccgttg agctctttga gggcatgaag 841 gcgtaccgcg gcgtcgatgg caagatccgc atcttccggc cggacatgaa catgaaccgc 901 atgaacctgg ccgcccagcg atccggtctg cccaccttcg agggcaagga gttcgtccag 961 tgcctgtccc gcctgctgtc cattgattcc gagtgggttc ctcacacgga caccgccagc 1021 ttgtacatcc gccccacact gatcggcatt gatcccacac tgggagttgc ttcctccgac 1081 tcggccctgc tctacacgat cctcagcccc gtgggcagtt actttaagac aggctcgtcc 1141 ggtgccgtct ccctgctggc cgatcccagt tatgttcgtg cctggccagg cggcgtgggc 1201 aatcgcaaaa tgggctccaa ctacgcaccc acaatcaatg tgcagaagga ggcggccgcc 1261 aagggactgc agcaggtgct gtggctctac ggcgaggatc atcagctaac cgaagtgggc 1321 accatgaaca tctttatgtt cttcgtgaac gatcaaggag aacaagaact ggttacccca 1381 ccgctgagcg gtctaatcct gcccggtatc acccgcgact ccatcctgcg catgacccgc 1441 cagtggggca agtttaaggt tagcgaggcg aacatcacca tgcccatggt ctgtgagctc 1501 ctcaaccagg gaaggctgct ggagctcttt ggtgcgggaa cggcgtgcgt ggttagcccc 1561 gtgaacagga tcagctacct tggccaggat ctgtatatac ccaccatgga gcaggagaag 1621 cccgttcacg agctgatccg cgaaacgctc accgacattc agtacggtcg ggtggatcat 1681 ccgtgggcgg tggtgatcga ctaagtcgat ctcccagccg atcccagcca gaaagcatcc 1741 aaccccagag ctgttaccct ttcccgttac cttaccgcat ccctttcccg taccgtgtat 1801 tagtaggatt tagtgccaag tgttttgtgg gtcgccaatg tgctcgaatt tgtttcgttt 1861 attgtgcatg tgtctatatg cttgcatata tcggatatgt acaatatata tatatatata 1921 tatattatat aatatagtag gatataagtc gagggccgat tcgttaagtt gcatttaaat 1981 gtatatttat ttatttatgt caggaattcg aattgtacat aattccaact ggttcaatgt 2041 tatttatagt ttccctaatt attttcatat ttttagttgt gcgcctttag atatatatat 2101 atatattttt ttttttttta ctttatctaa agctatgaat cgtctttttg cgcttttact 2161 tccaagcagc atcgaaagca aggtaaaatt accaactaca aattttagga ctagtataaa 2221 gagatcgaga attcccccat ccaagtgacg ggaattaatt gaaaacgtac cggaggcgaa 2281 atgcatttat tagtgagtaa gtgatcgaag cgttcttgga ggtaaaagcg gcacgagagg 2341 cacgagggca gcagccgagc tgagctgtga ctaaagctaa tctgaacctg aacccgtcag 2401 tagaacctag gcctaggctg tagatactaa acccgaatca agctgtatac tatatctgta 2461 acacctagtt gataagcgaa ccaagcgatg aataaacgat gacaaaaatc