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LOCUS NM_132596 3403 bp mRNA linear INV 26-DEC-2023 A (CG4004), mRNA. ACCESSION NM_132596 VERSION NM_132596.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3403) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3403) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3403) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3403) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3403) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3403) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3403) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3403) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3403) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3403) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3403) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3403) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3403) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3403) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3403) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3403) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132596.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3403 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3403 /gene="CG4004" /locus_tag="Dmel_CG4004" /gene_synonym="CG18137; Dmel\CG4004" /map="11B14-11B14" /db_xref="FLYBASE:FBgn0030418" /db_xref="GeneID:32226" CDS 94..1053 /gene="CG4004" /locus_tag="Dmel_CG4004" /gene_synonym="CG18137; Dmel\CG4004" /note="CG4004 gene product from transcript CG4004-RA; CG4004-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572824.1" /db_xref="FLYBASE:FBpp0073519" /db_xref="GeneID:32226" /db_xref="FLYBASE:FBgn0030418" /translation="MSQMGGTCLYDEPEIMEEFISCYQYFTALWDSSSPDYLSKQKKE PGYQELLKILRRVNSNCSIQDVKRKINSLRCCYRREFKKVQESVNGYQTRLWWFHLMD FLKPVLNIQSPARVKSENVDDSLDETSIQDVDIMSDAFPHEEDMLRLDAVGDGDVEPE PEPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRI RNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKR MASHFRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHK" misc_feature 148..405 /gene="CG4004" /locus_tag="Dmel_CG4004" /gene_synonym="CG18137; Dmel\CG4004" /note="Alcohol dehydrogenase transcription factor Myb/SANT-like; Region: MADF_DNA_bdg; pfam10545" /db_xref="CDD:463144" ORIGIN 1 ctatcattca acgtcagacc gtcgaatcga gcgtgaaaac gtgcaataaa accaaagtta 61 acaaaaacaa aaaaaaaaaa accagactac ttaatgtccc agatgggcgg cacatgcttg 121 tacgatgagc ccgaaatcat ggaggagttc atcagctgtt atcagtattt caccgccctg 181 tgggacagca gcagtcccga ttatctatcg aaacagaaaa aggagcccgg ctatcaggag 241 ctattgaaga tactgcgacg cgttaatagc aactgttcga ttcaggatgt taagcgaaag 301 ataaactcgc tgcgttgctg ctatcgtcgt gaattcaaaa aggtacagga atcggtcaat 361 ggctaccaga cgcgtctctg gtggtttcat ctgatggatt tcctcaagcc ggtactcaac 421 atacaatcgc cggccagggt gaaatccgag aacgtggacg atagtctcga cgagaccagc 481 attcaggatg ttgacattat gtctgatgcc tttccacacg aagaggatat gctacgtctt 541 gatgccgtgg gtgatggcga tgttgaaccg gaacccgagc ctgataacga tcccgaattg 601 gataacatgg atgatcatgt tgatgattat cgtaacaatt catcggctgg gagcattaag 661 aacaatggct atcagcagca caccgtatct tcgcaccagc agcataacgg tgaatcgcag 721 acttcggata aatccggacg tcgcatccgt aaccgacgaa gacgcagtag caatgacacc 781 gattacgttg aagcggcgag aaagcgtaga aatgtggaga cttcgaatag agatagagac 841 tggcatagag agcgggatag ggagcgagac agaaagcatg aaagcgacag cgagtacgag 901 tgcgagctga tcggaaaacg gatggccagc cacttccggc gtatgcgtcc ggatcagcga 961 cttttcgccg aacggatcat tagcgaggtg ttggtctacg gccgaatgaa tcgcctttcg 1021 ttcgagaccc aatttagtat gggtcataaa taagtgaaac taaactaaaa ctcatttcgc 1081 atatgaaaat gcgattgaaa acgtatgaac gacaatttaa ttatttcaaa ttctatcttt 1141 aacgatcatt tcatttggca ttacggttta aaaaaaaagc ataatattga acgacaaaat 1201 gcactatgtc cgttatagca ataattaata ttgcataaga aacaaaaatg taattaagtt 1261 aagctgaaaa ctcgacaata tttttaagtt ttcgtagttt aagtggaaaa atagatagaa 1321 ccgaaatgaa tgatattttt agccgcctgc aacgctaagc aaaaaaaaaa ccaaaaaaaa 1381 aaatgcagaa atggcaaatg taaagcgaaa acggctaaaa gcgaaaatgc gatgcaaaag 1441 ggaaggagaa gaaaagggca aaaacaaaaa ggatgaaagc aaataaagga actggttgtt 1501 attcatttaa aatttgacta agtggttctg catgcggatc ccttcccctc ttcatccccg 1561 ccccctttcc ccgacaagca gccagcacat cttgttttgt cagcctgcct tcttctttct 1621 tctacttctt catctcctcc gccttcttcc cgttttgcta attttctgct gctgtgctgc 1681 gattctttta tttcaggttt ctttgccttg ccgctgtgtt ctcttttcct tctttactcc 1741 ttttcttttc tacacactcc caatcttttc ctttgccgtt tcctttgctt tagtaacttt 1801 aatttgttgg cattgccatt gccgttatac tggcgttcgt ctctttctcg aaatctatcg 1861 cgccctctcg cactgtcttg ccctttcact cattgctcta ttatcgttac acagccaaat 1921 aaaatgggta ctttttaaag taaacaataa tctcaatatg ttatataaca ataaagctca 1981 tttggaaaaa gaatagttct cacattatac acaatgtatt attgttttct atcaattaaa 2041 attaattaaa ataattaaat taatactact taaaatacat acatatagag agaaatatcg 2101 ttctgtgtaa ttttcggtta ggtcggttct attttctttt gattttcttt atgattctct 2161 ttatgattct ctgttttcgc cagtaagatg gtaaatgaca gaagggcgga aaactacaga 2221 aagggcttgt cctgtgggat tttctatgca accgccattc accaagtttt cacacgttaa 2281 tcaccataag aagttttcgc actgtgtagc cacattgccg ttggggtttc ttttctggat 2341 ttttttcctt ttcatcgttt tatttttggg attttcgctt ctgacgtcgt tacagttgtt 2401 gttgtagccg gcatttagcc gtctcgggaa aaaataacaa catttagcca aattactgtc 2461 cccagttatt tagcctcctt tttccaccct ttccgcatgc acttgaagaa gaaacgtgta 2521 cgtttgtcaa gatatacaag attgctttaa tgaaaatatg cacgagtagt acatcgagtt 2581 tttgagaagt gcatgaaaaa atgaaacttg tagtttctgg aaaattcgca tgtttccaag 2641 ttttgatgtc ctttgtgtgt gagcgtatgc gtgtgtgtgt gtgtcgccat ttgcctttct 2701 cagcgtcttt ggttttgaca ttttgcctcc tttactaaac cacaccaacc cccccccccc 2761 acacaattgc ctttacctac cccaccacac cccttagtca tacttctcct acggcaaaca 2821 gtttttggtc gtagtcaacc gcattaatcc atccccatct cagcgtgtgt gcgtgtgtgt 2881 gtgtgtgttt gtggcacaaa atgaaaatgg caaaacaagg tcaagtgtag ggagcaaagt 2941 ttgtttgagt ggcacacaca cgcacacaca agctacatac aaataagcaa ataacacaaa 3001 aataagaaac attaagttca catcactttt tcatcaagag atgctcttca gattcataat 3061 ttaatacatt ttaaatgaat taacattata atttatatat actatatact tcttaagaaa 3121 tcgaaatgga attgtttttg cctttttttg taatattgtt aggctataaa aatccaacaa 3181 cgcgtcatta ttttttttta tttttctaat aaataaacaa gttgtttcga ttttaatcag 3241 ctggtgtatc gagactaagt acatgtgtca catgtatgta tgtacataag tatgtacata 3301 tgtatattag attatataag ttagaacaag tgaaatcgtt cgataaggct tagaaaaatg 3361 atttcttatt aacaaaacgc caaaaataaa tgaattgatt aac