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LOCUS NM_132573 3827 bp mRNA linear INV 26-DEC-2023 C (CG42258), mRNA. ACCESSION NM_132573 VERSION NM_132573.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3827) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3827) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3827) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3827) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3827) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3827) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3827) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3827) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3827) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3827) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3827) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3827) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3827) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3827) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3827) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3827) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3827) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3827) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132573.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3827 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3827 /gene="CG42258" /locus_tag="Dmel_CG42258" /old_locus_tag="Dmel_CG15926" /old_locus_tag="Dmel_CG17788" /gene_synonym="BcDNA:RE29468; CG15926; CG17788; Dmel\CG42258; Pripl4" /map="11A11-11A11" /db_xref="FLYBASE:FBgn0259143" /db_xref="GeneID:32196" CDS 572..1969 /gene="CG42258" /locus_tag="Dmel_CG42258" /old_locus_tag="Dmel_CG15926" /old_locus_tag="Dmel_CG17788" /gene_synonym="BcDNA:RE29468; CG15926; CG17788; Dmel\CG42258; Pripl4" /note="CG42258 gene product from transcript CG42258-RC; CG42258-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_572801.2" /db_xref="FLYBASE:FBpp0288833" /db_xref="GeneID:32196" /db_xref="FLYBASE:FBgn0259143" /translation="MLSNGSAGVSADVDVAAGGAADCDERTLLLSEEIVVAPLPASAF SAGVAAAAPPTSLPLVHTTTTQQNNNNVNNNNNGSLVVSAKNMANNKSNKNSSKCKNN EASSSNNNNAATAAATTATTTGEEPVTTTITTATTAADDEDISSDLSDKFPRPQKKPG KLSKLGTKSVGLKRVSFGSSKGSMVETLVFETPTPLSEHMESTFGFDAADTAAAAAGQ PQLASTLASQQPLAGGYSGDYAKGTMDDSGIEVQEESERSIVRVSIYNSSQPQVICPP AEYLDFPEFNYSSNLLDYNTMATTAAGIQQQQVIGLGAAYDRQQSTDSGWDNPFRPGG DLSREADEIVNMIRGGKPITPTEERTIGNGSAQHADDNCNGGTAIGESVIKSNLSQNL ATAQNGTNSHASATADAGAGKAATATELSGGTGNNGVTSLGQVSKQVVPGPTSASHVV IDEKKNKKKGCCVLQ" ORIGIN 1 aaaacggaac agaacagaac agaaattcga agcgctgcca aatatacaca cacgattgtt 61 ccgactgtat cgctccgatc cgaaaaaatc cgagatccga attcgcagga caagagcaac 121 agagcgcgcg ctaacggatt tattaaatgc acatgcatat atttatttat aaacgcgagt 181 ttctggtcgg gaactaaagt gcaggtcacc gacgcctctg ccgcagccgc tgcctccgtc 241 gacgtcgcag ttgcggtagc tgttgctgct tgtttttttt tttgttatta ctgtttacag 301 aggtgcgcgt taactgtgct aaaaaaaata tagaaatata tatttgtgtg cctttgtgca 361 agtgctgatt ttgtttggct ttttttttgg gttgtcatta ttttgcacac acaaattgcg 421 atttaactaa gtgtttgtgt gtgtgtgtgg cgcagctata tatatatata aagatatacc 481 tatgctggcc ctggccccgc ccaccacgcc gccccctcga aatgcaccgt tagccgcgaa 541 atcgaaatcg aatcgttttg ctgcaaccgc aatgctgtcc aacggctctg ctggcgtctc 601 tgccgacgtt gacgtcgccg ccggcggcgc tgccgactgt gatgagcgaa cgcttttgct 661 aagcgaggag attgttgttg cgccgctgcc tgcgtcggca ttctctgccg gcgtcgctgc 721 tgctgcgccg ccaacgtcgc tgccactggt gcacacaaca acaacgcagc aaaacaacaa 781 caatgtgaac aacaacaata atggttcgct tgtggtcagt gcgaaaaaca tggctaataa 841 taaaagtaat aagaatagca gcaaatgcaa aaacaacgag gccagcagca gcaacaacaa 901 caatgcggcg acagcagcag caacaacagc aacgacgaca ggagaagaac cggtaacaac 961 aacaataaca actgcaacaa cagcagctga tgatgaggat atatccagcg atctgagcga 1021 taaattccca cgcccccaaa agaaacccgg caaactgagc aaattgggca ccaaaagcgt 1081 cggcctcaaa cgcgtctcct ttgggtcctc gaagggttcg atggtggaga cgctcgtctt 1141 cgagacgccg acgccgttgt cggagcacat ggagtccact tttgggttcg atgccgcaga 1201 taccgccgct gccgccgctg gtcagccgca gctggcgtcg acgctggcgt cgcaacagcc 1261 tctcgccggt ggctacagtg gagactatgc caaggggacc atggatgaca gcggcattga 1321 ggtgcaggaa gaatcggagc gttcgatagt gcgcgtttca atctacaaca gcagccagcc 1381 gcaagtaatc tgtccaccgg cggagtatct ggactttccg gagttcaact acagcagcaa 1441 cctcttagac tataatacga tggccacgac ggcggcgggg atccaacagc agcaggtgat 1501 tggcctggga gcggcatacg atcgacagca aagcaccgat tccggctggg acaatccctt 1561 tcgaccaggc ggcgatctgt ccagagaggc tgatgaaatt gtcaatatga tcagaggtgg 1621 caagcccatc acacccacag aggagcgtac aattggcaac gggagcgccc agcatgcgga 1681 cgacaattgc aacggcggta cggcgatcgg cgagagtgta atcaaatcaa atctctcgca 1741 gaatctagca acagcacaaa atggtacaaa ttcccatgcc tctgcaactg ccgacgctgg 1801 cgccggaaaa gcagcgacgg cgaccgagct gagcggcgga accggaaaca atggggtcac 1861 ctcgctggga caggtgtcca aacaggtggt tcccggaccg acgtccgcta gtcatgtggt 1921 catcgacgag aagaagaaca agaagaaggg ctgctgtgtc cttcaataat tggggcaaat 1981 agcgggggac gcgatgagca gatttgtggg gtaggggggg aggggcggtc attttcctgc 2041 tagccctgtt ttttgatgtt aatgtttttt tggacgaaat ggagccaagc tgttaatata 2101 tttcatgccg cataaatcgc tttgcttcgc tttgcaagag gagaccaaaa ccgataccag 2161 agattgagat tcagacaaca caagaatgaa ctagaggaac attaggaaaa ccaagctctc 2221 tgaccaacag cagccacagt gagaaccaac atttatgcaa caccctgcag cggttgctcc 2281 agcttcgaaa cataagtcga tgaacacttc aacatttgaa ttgtaaacct gaaggccgca 2341 cttatatatg tttatatata tatatattta tatatatata tgatatatat atatctgttt 2401 gtctgcaggc gatgctatat tgcaattcac cattattata tatatatata tattattttt 2461 ttcccccttt ttctgtaatg tgactcgacc tgcatatgtg tattataaaa attattgtat 2521 gcatatatgt gaatttattt tttttttttt tgtaattgta aaatttagtg cggctttttt 2581 aaaaaatgaa aaggatgtag ggacgtttaa caagtaaaaa ctaaaagaac aaaaaaataa 2641 cgaaaaacgt tttgcttgca tgcataatgg atacaaaatc gaaaaaaaaa atttaacata 2701 aagaataatg tatttatttt tatttatatg atgacgatga agcagatgaa agtaaattaa 2761 atgttaaacc ttaaaacaaa tatacacaca cacacacgta catatacaaa tacacacaca 2821 cacatacgca tatatactat acgatatatg agatgaaatg aatgacgcaa taaagcaaaa 2881 cgagatgaac cggaaatagt agaaaaagaa aactaattaa aaaaaatccc aattttctaa 2941 ggctaaataa tgagtaatta ttttgtatca ttatttacat gaggcagaca attgaaaacc 3001 gggtgcgctg acttttgggc ccactgtagc ggctgatcaa aggaaagcgg tgctgaagaa 3061 agagggcgaa aatggtagaa aaggtcttag ttctttgagc agaatatata catatatata 3121 tatatataga aagaaaggct ttgaagaaac cgaaatccca agacaaaagc ttagaaatga 3181 ggccagagaa agtatataaa aaggaagaac caccgttttt cagcttagtt aagcacaata 3241 caaccacccc tcacaaccaa ccaaccaacc gacccaaccc cccatttctc caaccccttt 3301 cactcagtat ttttctcagt ttgaacgcaa atcaaaagca gaaaaatgaa tgaaatggca 3361 aacaaatacg caaaagtaat atgcaggtaa atcgagcaaa gcgaggtaca agaatgttta 3421 cacagagaga aaagcagcaa ccaaatagct aaagaatgta atgagaacac cgaaatggac 3481 agccacaccc acaaatatgt aacactcaca cactctcaga cacacaccta caaacccaca 3541 caccaacagc ctaagcatca atgtgctgca tttgataaac gtaatgaaaa acaaaaaata 3601 aattaaatat atatatatat atatatatac acacacacag atatatgaaa tagcaatatt 3661 gtttcaactg aatataagca aacagcaaaa ggaatattcc aaagtccgca aatgaagata 3721 aacaaatccg taaactaaat ccatcggagg gttaaaaaaa aacagcagcc agtacagcaa 3781 taaaatcaat atttaatatt gtaaatttcc gattccaaaa agaaagc