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LOCUS NM_132515 3008 bp mRNA linear INV 26-DEC-2023 transcript variant A (Tango10), mRNA. ACCESSION NM_132515 VERSION NM_132515.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3008) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3008) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3008) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3008) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3008) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3008) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3008) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3008) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3008) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3008) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3008) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3008) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3008) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3008) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3008) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3008) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3008) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3008) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_132515.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3008 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3008 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="Transport and Golgi organization 10" /map="10D7-10D8" /db_xref="FLYBASE:FBgn0030330" /db_xref="GeneID:32125" CDS 179..1942 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="CG1841 gene product from transcript CG1841-RA; CG1841-PA; Tango10-PA; transport and golgi organization" /codon_start=1 /product="transport and golgi organization 10, isoform A" /protein_id="NP_572743.1" /db_xref="FLYBASE:FBpp0073398" /db_xref="GeneID:32125" /db_xref="FLYBASE:FBgn0030330" /translation="MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAG GGGAGAGPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSSED LDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVDGKEFPAHRVI LCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQFIKYLYVGQIEVTLQTVMP MLALSDKYNIRDLIDLCVDYMNKHVAKAATSGYLVSWLQYTLSFTPTHNDLTETLKRF LKWNLEMVAESRDFVEMDPAILILLLQQNDLVVTSEYKLFDILQTWLLHRREQMEATG SGGFMELIEQTVSHIRFGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDR VREVRATESGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEERFKIAVLI VGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTSLYLSPHLTGTARNTLT LHVVITPMGSHTCRDTPPFQF" misc_feature 554..895 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BTB_POZ_BTBD17; cd18292" /db_xref="CDD:349601" misc_feature 926..1147 /gene="Tango10" /locus_tag="Dmel_CG1841" /gene_synonym="CG1841; Dmel\CG1841; tango10; TANGO10" /note="BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 17 (BTBD17); Region: BACK_BTBD17; cd18493" /db_xref="CDD:350568" ORIGIN 1 ataaatcgta tcgtgtctgc atctgtctgt cgttgttttt gcatttgaag tgagactttt 61 tgccgtgtct ttggctcgtc cttacgaagc cgtcccgtag gttgtccttg tgcacgttgt 121 cagcgcagaa caaatcccta gccgggtgcc agtctatacc taatatcccc gtttcccgat 181 gaacgacaac ggtaacggcg gagcagcgcc agtctccggt ggagtgtgcg gtgttggtgg 241 tgcgcacgga gcggctggtg gcgctgatgg tgctggtggt gctggcggtg gcggcggatg 301 cggggctggc ggtggaggtg ctggtgcagg tccgggcggg ggtcccgggg gcggagcagc 361 tgctgcggac ctggctggcg aggcagctgg aggagcagca ggtggtgatg cagccattaa 421 taaccaagct aatgccaatg gaaccagcga gagcccagcg aaaggactta attctagcga 481 ggatctggac gccaagcggc gcaagtgtcg cgaaacggaa gaaggccagg atgaagccag 541 cacgatgatc gatgcgaata gtgtgctcaa taagatcgcc aacctgtacg ccgaacagct 601 gatgtcggac atagtgctac tggtggacgg caaggagttt cccgcccacc gcgtcatcct 661 ctgtgccagc agcgacgtct ttcaggtgat gctaatgaat ccggagtgga acgagtgcag 721 caagcacgtg atcgaattgc acgaggaagc ctgctgttcg gcggtgtttc cgcagttcat 781 caagtaccta tacgttggcc aaatcgaggt cacgctgcag acggtgatgc caatgctggc 841 gctgagcgac aagtacaata tacgcgacct gatcgatctc tgcgtggact acatgaacaa 901 gcacgtggcc aaggcggcca ccagcggtta tcttgtgtcc tggctgcaat atacgctctc 961 cttcacgccc acccacaacg atctcaccga aacactcaag cggtttctca aatggaacct 1021 cgagatggtt gccgagtcgc gggactttgt tgaaatggac ccggccatac tgatactgct 1081 gttgcagcag aacgatctgg ttgtcaccag cgagtacaaa ttgtttgaca tcctgcagac 1141 gtggctgctg catcgtcgcg aacagatgga ggccactggc agtggcggtt tcatggaact 1201 gatcgaacag actgtgtccc acatacgctt cggcatgatg acgccgcgcc agctctcaca 1261 cctgctaatg gatccgctgg tcgagtatca caaagagttc ctcgtcgagc gcattgccat 1321 cggcatgagc tatcaatcgg gccatgagga tcgggtgcga gaggtgcgag ccaccgaatc 1381 gggtaagctg cagtttacgc cgcggctata ttggaacgac acctggagcg tcgacatcga 1441 tgtgcacaac tttaccgcga tcgaggatta taagaactat gtgacctgct tcttttcgca 1501 gcgacacatt gccgagactg aggaggacga tccctgcatg acatgggaaa tcgagttttt 1561 cccgcgaggc gttaggtata acaaggccaa aatggtatgg ggcgaggacg taccaggctg 1621 ctctttgaac acagtgcgtc tacgggttac ctgcaagcat caaaacatcg gagaggagcg 1681 atttaagatc gccgtgctga tcgttggcat gcaaaaccag attatgcaca tccgcacagt 1741 tgtagagcgt acggagtact tctccgatac gtcgcgcgtc gtcaacctgg acaacctgct 1801 gccgtacgag gagctggagc acacatcact gtacttgagt ccccatctga cgggcaccgc 1861 tcgcaacacg cttaccctgc acgtggtcat cacgccgatg ggctcccaca cctgccgaga 1921 tacgccgccg tttcagttct aaaaaaaaaa aacacaaatt atgaagcggt cctgtgggca 1981 tctcaactat agcactccgt acttcccggc gcatccacag gcacctcatg catccacagc 2041 caccactgta tttcaaacta ccatttaaca tgtgtatgta tgtaaaaatc caatgcgact 2101 gcgaatccca tgggctcaac ctttgcgatc ttaactggcg gtctacaccg gcccccaatc 2161 gatcacaact cgattgcaat atgatttgtt attagtttat tgttttatat tacactattt 2221 cctttaagtt aggcgcagcg agagttactg agtgagtgag ttcgtaggca gagccatatt 2281 aaagtgattg attggacacg acgcccattt ggtactgtat tcaccttacc atttcgcaga 2341 attaccgcaa atgaaaatgg actatggaaa ggagtttttc taataaacgt taaactgtaa 2401 actaaaaaag aaaaccataa aatcgccgac gacatggctg agaaagagag agagggtcac 2461 tatttggcta tttgccatct cgtttgcatg aggcatcagt tttaatgttt tacagcgccc 2521 gcttaggctt ttggatccct ttttacgagt gcgtttatgg cccgggatca acatgtcgcg 2581 tctcgggggc ctatctttat gtgtgctcta ctgtccatat agtctacagt gcggaacatc 2641 aaatatgtca tatttagatg ggactctggg ctctggtctc cggatatcca gatatccaga 2701 tagccagata gccaagacat aacgaatata catgcacaga tgtgtgaatc ggttcaggta 2761 tcggccatca atcgaattga tttaatcttg gcgttaatgt agttgttaaa taaaatgtct 2821 cttcaaaaat cagctgtggt ctattattat tatgcgtttt cattagactg aactaaagag 2881 tgtagaatta ctgtcattta acgatataat ttagtgattt cggttttaat taaattattg 2941 cctaacgttg accagtcatt ttgtaaaata acgtctctga gaaacctgga ataaaggtgt 3001 gtaaaact