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LOCUS NM_132512 2795 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132512 VERSION NM_132512.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2795) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2795) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2795) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2795) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2795) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2795) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2795) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2795) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2795) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2795) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2795) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2795) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2795) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2795) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2795) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2795) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2795) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2795) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132512.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2795 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2795 /gene="FucT6" /locus_tag="Dmel_CG2448" /gene_synonym="6-FucT; BEST:CK00490; CG2448; CK00490; dalpha6Fut; Dm alpha1; Dmel\CG2448; Fuc-TVIII" /note="alpha1,6-fucosyltransferase" /map="10D5-10D6" /db_xref="FLYBASE:FBgn0030327" /db_xref="GeneID:32122" CDS 505..2364 /gene="FucT6" /locus_tag="Dmel_CG2448" /gene_synonym="6-FucT; BEST:CK00490; CG2448; CK00490; dalpha6Fut; Dm alpha1; Dmel\CG2448; Fuc-TVIII" /EC_number="2.4.1.68" /note="CG2448 gene product from transcript CG2448-RA; CG2448-PA; FucT6-PA; core alpha1,6-fucosyltransferase" /codon_start=1 /product="alpha1,6-fucosyltransferase" /protein_id="NP_572740.1" /db_xref="FLYBASE:FBpp0073457" /db_xref="GeneID:32122" /db_xref="FLYBASE:FBgn0030327" /translation="MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQ AAGESELNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLENDAL NPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEFEPSLEYEFTR RRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQVLLQGAEHKRSLLSDMER MRQSDGYEAWRHKEARDLSDLVQRRLHHLQNPSDCQNARKLVCKLNKGCGYGCQLHHV VYCFIVAYATERTLILKSRGWRYHKGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQV LVLPIIDSLMPRPPYLPLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFL TSGMRNLGWERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDIHLLSMSDH LVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNAHNRRVVIAHKPRTHED LQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFPSFKVEEKVDTAKLPLYAGI" misc_feature 847..2136 /gene="FucT6" /locus_tag="Dmel_CG2448" /gene_synonym="6-FucT; BEST:CK00490; CG2448; CK00490; dalpha6Fut; Dm alpha1; Dmel\CG2448; Fuc-TVIII" /note="Alpha-(1,6)-fucosyltransferase N- and catalytic domains; Region: FUT8_N_cat; pfam19745" /db_xref="CDD:466170" misc_feature 2158..2322 /gene="FucT6" /locus_tag="Dmel_CG2448" /gene_synonym="6-FucT; BEST:CK00490; CG2448; CK00490; dalpha6Fut; Dm alpha1; Dmel\CG2448; Fuc-TVIII" /note="Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8); Region: SH3_Fut8; cd11792" /db_xref="CDD:212726" misc_feature order(2173..2175,2179..2181,2188..2190,2200..2202, 2254..2259,2302..2304,2308..2313) /gene="FucT6" /locus_tag="Dmel_CG2448" /gene_synonym="6-FucT; BEST:CK00490; CG2448; CK00490; dalpha6Fut; Dm alpha1; Dmel\CG2448; Fuc-TVIII" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212726" ORIGIN 1 catcgatagc atggtgtgct aacaacacag ctctagtgct aatcaaaaga aaacacagaa 61 caggacggaa atatatagaa tacttttgca cttaatttga cttgccacga ctacctggcc 121 aactcgatcg gcgatataga ccaccggccc atcagtcaat ttcattctgg cattgatcga 181 gctccgtgaa acttgcattc cagctggcca ccatcccata cgtccatata tcctttataa 241 aatatctata aatcgaagag gaatcctagc cccgccgacc atgtcattgg atcgccttgg 301 ttgctggccg gatcggagtt aattgagact atgcaccgga atcgaaacag ctccgcattg 361 aagtacacgt agagagcatt tccgagtccg cccccgttcg gagccccgtt ccttgatccc 421 ctggaagatc gattgtggtc ccggcgagcg gagggcagaa tccagaggag gaggaggagc 481 aggagcagca gtggaaacgc cggcatgctg ctggtgcgtc agctattcgg ggcttcggcc 541 aactcctggg cacgcgccct catcatattc gtactggcct ggatcgggtt ggtctacgtg 601 ttcgtggtca agctgaccaa tactcagggc cagcaggcgg ccggggagag tgagctgaac 661 gcccgtcgca tatcacaggc gctccagatg ctggagcaca cgagacagcg caatgaggag 721 cttaaacagc tcatcgacga gttgatgagt gaccaactgg acaagcagag cgcaatgaaa 781 ctggtgcaaa ggctggagaa cgatgcgcta aatccaaagc tggcgcccga ggtcgccggc 841 ccggaaccag aatccatgtt cgagtccgcc cccgctgatc tgcgcggttg gaataatgtg 901 gccgagggag cgcccaatga tctggaggcc ggtgttccgg atcatggcga attcgagccc 961 agcctagagt acgagttcac gcgcagacgc atccagacga acatcggtga gatctggaat 1021 ttcttcagca gtgaactggg caaagtgcgt aaggcagtgg ccgccggcca tgcgagtgcc 1081 gatttggagg agtccattaa ccaggtgctg ctccaaggcg ccgagcacaa gcgctccctg 1141 ctgagcgata tggagcggat gcgtcagtcc gatggctacg aggcctggcg acacaaggag 1201 gcacgggatt tgagcgattt ggtacagcgg cgcctgcacc atctacagaa tcccagtgat 1261 tgccagaatg ctcgcaagct ggtctgtaag ctcaacaagg gctgtggcta cggctgccaa 1321 ctgcaccatg tggtgtattg ctttatagtg gcctacgcca ccgagcggac gctcatctta 1381 aaatcccgcg gatggcggta tcacaagggc ggctgggagg aggtgttcca accggtgtcc 1441 aacagctgcc atgatgcggg caccgccaac acatacaatt ggccgggcaa gccgaacacc 1501 caggtgctgg tgttgcccat cattgactcg ctgatgccga gaccgccgta cctgccgctc 1561 gccgttcccg aggatctggc gccgagactt aagcgtctgc atggagaccc catcgtttgg 1621 tgggtgggtc agttccttaa gtatttgctc cgaccgcaac caacgacgcg ggattttctt 1681 acctctggca tgcgcaattt gggttgggag cgtcccattg ttggcgttca tgtccgtcgc 1741 acggacaaag tgggcacaga agcggcctgc cacagtgtgg aggagtatat gacctatgtc 1801 gaggactact accgcacgct ggaggtaaac ggcagcactg tggctcgccg gattttcctc 1861 gcatcggatg atgcccaggt tattgaggag gcgcgccgaa agtacccgca gtaccagatc 1921 attggtgatc cggaggtggc gcgcatggcg tccgtatcca cacgatacac ggacaccgcc 1981 ctgaacggga tcattctgga tatccacctg ctttccatgt ccgatcatct ggtgtgcacc 2041 ttctcgtcgc aggtgtgtcg cgtggcctac gagataatgc agacgatgta tccggatgca 2101 gcgcatcggt tcaagtcgct ggacgacata tactactacg gtggccagaa tgcgcacaat 2161 cgccgcgtcg ttatcgccca caagccgcgc acgcacgagg atctacagct gcgtgttggt 2221 gacctcgtct cggtggctgg taaccattgg gatggcaatt ccaagggcaa gaatacccgc 2281 accaaccagg gcggcctatt cccctcgttc aaggtggagg agaaggtgga caccgccaag 2341 ctgcctctct atgcgggcat ttagttagtt gctcacatca ctacattctc ggccatgttg 2401 ttgatcgatc tgtaaatcct atctgccgca ttccacctgg aatttccatg gtgcatatcg 2461 attcggctcg gatcagcatc accagaatct atcgaatgtc cagaatctca aatgaaatct 2521 cgctctttct gtacttgtcc atcaatatgt gactatttct tcatgttctc gtctgcgcac 2581 ttttacgctc tgatttcgat tccgaatctt attcttattc ttattctgca tttgtacaag 2641 tcttttaata agatgtaagt cgaaagccga agaaattatg ttgacaagaa tatacataaa 2701 gatatttata tatataaata aattatatat agaagtgcat gtagtttcac taagcgcaat 2761 atagtctatc acctgtaaaa tagttgaaag aaaac