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LOCUS NM_132446 2354 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132446 VERSION NM_132446.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2354) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2354) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2354) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2354) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2354) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2354) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2354) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2354) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2354) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2354) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2354) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2354) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2354) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2354) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2354) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2354) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2354) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2354) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132446.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2354 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2354 /gene="vex" /locus_tag="Dmel_CG42339" /old_locus_tag="Dmel_CG12626" /old_locus_tag="Dmel_CG15204" /gene_synonym="CG12626; CG15204; CG42339; Dmel\CG42339" /note="vexed" /map="9F13-10A3" /db_xref="FLYBASE:FBgn0259241" /db_xref="GeneID:32033" CDS 145..1332 /gene="vex" /locus_tag="Dmel_CG42339" /old_locus_tag="Dmel_CG12626" /old_locus_tag="Dmel_CG15204" /gene_synonym="CG12626; CG15204; CG42339; Dmel\CG42339" /note="CG42339 gene product from transcript CG42339-RB; CG42339-PB; vex-PB" /codon_start=1 /product="vexed, isoform B" /protein_id="NP_572674.3" /db_xref="FLYBASE:FBpp0289140" /db_xref="GeneID:32033" /db_xref="FLYBASE:FBgn0259241" /translation="MSLLLLLLAVILPQRQLLPFVSGGSCREAQLCCNGRDSSCVVQK APINAIIEDLSDKPCYCDHACLKLGDCCDDFKDHCGVLDCQVGDWGAWSECDRSCGTG MMTRNRQILQAAQNGGKHCPTLQQKRSCQGYRCHGHHDKKILREMALLLPAALTHNHH VNESGDLRHNLRTRYRDTYKHNHDQEYCVEFEVIKSSKACNKLPPYNLMTEGDRITVR CDLEALIQDSAGSSTTARTPQGPTTPSTTTVSSAASAFGQRTDDLEEERLQRETSSEE EATNQDGEAEEEDEEPEQDEQDDLQNALDSDSNESTDYRHQRQSQMSQMSHSRRTAGK RSAVPATPSPTLPPTYHCRGEGLAGRTTRWSALPAPSCRGKWLRLTVGPPKKCGHAQF IFV" misc_feature <307..384 /gene="vex" /locus_tag="Dmel_CG42339" /old_locus_tag="Dmel_CG12626" /old_locus_tag="Dmel_CG15204" /gene_synonym="CG12626; CG15204; CG42339; Dmel\CG42339" /note="Somatomedin B domain; Region: Somatomedin_B; pfam01033" /db_xref="CDD:460034" misc_feature 394..549 /gene="vex" /locus_tag="Dmel_CG42339" /old_locus_tag="Dmel_CG12626" /old_locus_tag="Dmel_CG15204" /gene_synonym="CG12626; CG15204; CG42339; Dmel\CG42339" /note="Spondin-like TSP1 domain; Region: TSP1_spondin; pfam19028" /db_xref="CDD:465948" ORIGIN 1 ccggctttcg cagcgtgcgc atctcgtgac cggcagtttt tttttgctca gtgtatctta 61 gccgaaagtt taccaaccga ccaaacaacc aacgaacggt taaatccgca catagaccgc 121 atttcgatcc gattcggtga gacgatgtcg ttgctgctgc tccttttggc cgtcatcctg 181 ccgcagcggc agcttctgcc cttcgtatcc ggagggtcct gccgggaggc gcagctctgc 241 tgcaacggcc gcgactcgtc ctgcgtcgtc cagaaggctc ccatcaatgc catcatcgag 301 gatctcagcg acaagccctg ctactgtgac cacgcctgcc tcaagctcgg cgattgctgc 361 gacgacttca aggatcactg tggagtgctg gactgccagg tgggcgattg gggtgcctgg 421 agtgaatgcg accgaagttg cggcacgggc atgatgacgc ggaacaggca gatcctgcaa 481 gcggctcaaa atggtggcaa gcactgcccc acgttgcaac aaaaaaggag ttgccaagga 541 taccgatgcc atggacacca cgacaagaag atattgcgag aaatggccct tcttctgcca 601 gctgcactca cgcacaatca tcatgtcaac gagagtggag atttgcggca caatctgcgc 661 acgcgctacc gcgacaccta caaacacaac catgatcagg aatactgcgt ggaattcgag 721 gtaataaaat catctaaagc ctgcaacaag ttgccgccat ataacctgat gacagaaggc 781 gatcgcatca cggtgcgctg tgaccttgag gcattgatcc aagactcagc cggcagctcc 841 accaccgcca ggacaccaca aggacccact acgccgtcca cgaccacagt ttcatccgca 901 gcctctgcct ttggccagcg tacggatgac cttgaggagg agcgactgca gcgtgagacc 961 agcagcgaag aggaggcgac caatcaggat ggcgaggcgg aggaggagga tgaggagccg 1021 gagcaggatg agcaggatga cctgcagaat gccctggact cggacagcaa cgagagtacc 1081 gactaccgtc accagcggca gtcgcagatg tcgcaaatgt cgcacagccg ccggacagcg 1141 ggaaagcgca gcgctgtgcc ggccacgccc tcgcccacgc tgccgcccac ctaccattgc 1201 cggggggagg ggctggccgg acgcacgaca cgttggagcg cgctgccggc gccgtcgtgc 1261 cgcggcaaat ggctccgtct gaccgtcggt ccgcccaaga agtgcggcca cgcccagttc 1321 atcttcgtct aaggcgacgt ggtcatgccg cccactcaag ttgcggtgtc catttttttt 1381 tttctccgtg taggttatgg tgtacggtct cccccactca tcatatcata tcatatcacc 1441 cgcgcccctg ccacgccccc tcacttccgg cccaaaatca ataaagtacc ccatcgtatg 1501 taagcgttta aacattaagc cagtggatta agaagatcat agcatatgta tgtatatgta 1561 tgtgtgatga ggtcaggatt tttttttttg tttgtctcgc tagagaagag aaccggaaat 1621 aaaggataca ctgccagtga aatatagggt atatatggag gaatatcaca tatttctgaa 1681 gttttcgagg ggttctacaa tttcggacta ctaacttctg ctctcttaga tactttataa 1741 atttaaaaaa aaacttccaa agacttatga tctcctccac acacatgata ttcatcatat 1801 aaccatattg atatcacggc tgctgtggac ttccttcggt tagcatttct ctaattagtt 1861 aaggaaacac tcgcgtgtaa gcatttgggc tcaggaccca atcaacaact caatataaat 1921 gctgggggtc tgtgaagacg ctcggatctc ggatcggata atactagaaa ctagagacta 1981 agtcatcaaa taccgcataa catctacagt gaaaatggag tcgagctgcg tagtgaaaga 2041 acctatatat acatgtatgt ggatgtgcac gagtgtatct gtctaatcgt tagttccccc 2101 cgactcgcaa gcatatagca cacacacgtt ctacacataa cataacatat atgatacatt 2161 tgtcaaaagc aaatgattaa ggcccacaat ttttggttac ccaactggca gacaaccctc 2221 tggagtcgga attaacgttt ggatcttagt attaatctgg attttaggta cacacgaatg 2281 tcgaaataat tattataatt ataattaaac caataatgag atcattcaat aaagaacgag 2341 tataatttta aagt