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LOCUS NM_132421 2980 bp mRNA linear INV 26-DEC-2023 transcript variant A, mRNA. ACCESSION NM_132421 VERSION NM_132421.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2980) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2980) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2980) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2980) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2980) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2980) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2980) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2980) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2980) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2980) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2980) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2980) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2980) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2980) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2980) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2980) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132421.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2980 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2980 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="BTB (POZ) domain containing 9" /map="9E7-9E8" /db_xref="FLYBASE:FBgn0030228" /db_xref="GeneID:32000" CDS 185..2353 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="CG1826 gene product from transcript CG1826-RA; CG1826-PA; BTBD9-PA; BTB (POZ) domain containing 9 ortholog" /codon_start=1 /product="BTB (POZ) domain containing 9, isoform A" /protein_id="NP_572649.1" /db_xref="FLYBASE:FBpp0071426" /db_xref="GeneID:32000" /db_xref="FLYBASE:FBgn0030228" /translation="MSSQGHHKMSGGGKKGAMEQDYTDVVDLGDRFSADMARLCMNEQ YADVEFIVEEERIPAHRVILAARSEYFRALLYGGMAETTQRQIPLEVPLEAFKVLLRY IYSGTLLLSTLDEDSTIDVLGMANQYGFQDLEMAISNYLRQYLALDNVCMILDAARLY NLEELTEVCLMFMDRNAGDLLLHNSFNTLSKESLEEVLRRDCFFAPEVQIFLAVWKWS RFNSNVDFKSVVSYVRLPLMNLEHLLQVVRPSGILDPDKILDAIDERSTSKALPYRAA LWPEENVAAETFLSRCIQGECRDALLDGDVTTYDMENGYTRHCITDSKDAGIVVELGT FCMINHIRMLLWDRDSRAYSYYVEVSGDQQHWDRVVDYSDYHCRSWQYLYFEARPVRF IRLVGTQNTVNRVFHVVGLEAMHTAKVPRLVNHFVAPKTNVATVEMSAIVTDGVSRTR NALINGDYVRYDWDSGYTCHQLGSGEIVVRLGQPYYLGSMRLLLWDCDDRTYSFYIEI STNRKEWQMVVDRRNDRTRSWQNFHFTPRPVVYIRIVGTRNTANEIFHCVHLECPTQD KNYLKKIADMEKEREKREKEKKTAKTDDDNIASTSGSSLASGHAESPSTSSSSSQSVL RSIHWPPQTREVAVAPLTPPALSPPGTPALPAPLTPATSSPHNNHEQNQPSNISADAS HHTSPSSRSNPSPSLSRSRSQSAELEPVPPLVELDTRETL" misc_feature 254..607 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 9 (BTBD9); Region: BTB_POZ_BTBD9; cd18287" /db_xref="CDD:349596" misc_feature 617..913 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 9 (BTBD9); Region: BACK_BTBD9; cd14822" /db_xref="CDD:350518" misc_feature 1079..1381 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="F5/8 type C domain; Region: F5_F8_type_C; pfam00754" /db_xref="CDD:459925" misc_feature 1535..1846 /gene="BTBD9" /locus_tag="Dmel_CG1826" /gene_synonym="CG1826; dBTBD9; Dmel\CG1826" /note="F5/8 type C domain; Region: F5_F8_type_C; pfam00754" /db_xref="CDD:459925" ORIGIN 1 acatataaca gtttttcgcc gcaatagaag aatccctatt gtgccatcga tattatcgat 61 atcactaact gtcatcgatg gattgacgca gcaggcgaga cgaaacgtta attgtcaact 121 gttccctctg gctgcttaca cacataaata cacatcgcac ggaagaaaaa caaaaaagag 181 aaggatgagc agccagggac accataagat gtccggcggc ggcaagaagg gcgccatgga 241 gcaggactac accgacgtgg tcgatctggg cgatcgcttc tcagcggaca tggcgcgcct 301 ctgcatgaac gaacagtacg cggacgtgga gttcatcgtc gaggaggagc gcatacccgc 361 ccaccgcgtc atactcgcgg cacgcagcga atacttccgg gcgctgctgt acggcggcat 421 ggcggagacc acacagcgcc aaataccgct tgaggtgccg ctggaagcgt tcaaggtgct 481 gctgcgctac atttactcgg gcacactgct gctgtccaca ttggacgagg attccaccat 541 cgatgtgctg ggcatggcca atcagtatgg tttccaggat ctggagatgg ccatatcgaa 601 ttatttacgc cagtatctgg ccttggacaa tgtctgcatg attcttgatg cggcgcgtct 661 atacaatcta gaggaactca ccgaggtttg cctaatgttc atggatcgca atgccggcga 721 cctgctgctg cacaacagct tcaatacgct atccaaggaa tcgctggagg aggtactacg 781 gcgtgactgc ttcttcgccc ccgaggtgca gatctttttg gccgtgtgga agtggagccg 841 cttcaatagc aacgtggact tcaagtccgt ggttagttat gtccgcctgc cactgatgaa 901 cctcgagcat ctgctgcagg tggtgcgtcc ctcgggcatc ctggatcccg acaagattct 961 cgacgccatc gacgagcgca gcacttcaaa ggcgctgccc tacagggcgg cgctctggcc 1021 ggaggaaaac gtggccgcgg agacgttttt gtcgcgctgc atccagggag agtgtcgcga 1081 cgcgctgctg gatggagatg tgaccaccta tgacatggag aacgggtata cgcgccactg 1141 cattacggac agcaaagatg cgggcattgt ggtcgaattg ggcacgttct gcatgatcaa 1201 tcacattcgc atgctgctct gggacagaga cagccgggcg tactcctact acgttgaggt 1261 gtccggcgac cagcagcatt gggatcgcgt ggtcgactac agcgactacc actgccgctc 1321 ctggcaatac ttatacttcg aagcacgacc cgtcagattc attcgactgg tgggcaccca 1381 gaacactgta aaccgggtat tccatgttgt gggtctggaa gccatgcaca cggccaaggt 1441 gccgcgttta gttaaccatt ttgtggcgcc caagacgaac gtggccaccg tagagatgag 1501 cgccattgtg acggacggcg tgagtcgcac ccgcaacgcg cttatcaacg gcgattatgt 1561 gcgctacgac tgggactcgg gatatacttg ccaccaattg ggcagcggcg agatcgtcgt 1621 ccgtttgggc caaccctact atttgggctc aatgaggctg ttgctgtggg actgcgatga 1681 tcgcacctac agcttctaca tcgaaatttc gacgaaccgc aaggaatggc aaatggtcgt 1741 ggaccgccgc aacgacagga cccgctcctg gcagaacttt cactttactc cgcgtccagt 1801 ggtctatatc cgcattgtgg gcacacgcaa cacagcgaat gagatcttcc actgcgtcca 1861 cctcgaatgt ccgacccagg acaaaaacta cttaaagaag atagccgaca tggagaagga 1921 gcgcgagaag agggagaagg agaagaagac ggccaagact gacgatgaca atattgcctc 1981 tacctcggga tcctcgttgg cttcaggcca tgctgaaagt ccctccactt cctccagcag 2041 cagccaaagc gttttaaggt ccatccactg gccgccacag acaagggaag tggccgttgc 2101 cccactcact ccgccagcac tctccccgcc cggcacgcca gcacttccgg ctcctctgac 2161 cccggcaacc tcgtcgccgc ataacaacca tgaacaaaat cagccaagta atatcagtgc 2221 agacgcaagc caccacacca gtccaagttc aaggagcaac cccagtccca gcctaagtag 2281 gagcagaagc cagagtgcgg agttggagcc agtgccgcca ttggttgagc ttgacaccag 2341 ggagacgctc tgagctgatc gccgctgcgg ccgataatgt tttgtacttg aaatactcct 2401 gtggtctgtt agctgttagt ctccgcgctt agttatattt tgcagaccgt gctgctcttg 2461 ttatctagtc cttcccagtg ccccaatgct tggtggttcc aaaacctgtg cattgcatat 2521 tggttttgcg ttattacctt cgttatatac tatatgtata tacatatata tatatataga 2581 tatatgtttt tataatttta ttgtgatcca aaaataattc cttatgtttg caaggcagca 2641 gagttattta tataagcaat ataactgaat tctatgcaca cacacaccca cccacacaca 2701 caccacacac acacaccaca cacacacaca catgtttaac gcgaactcga atgcgatttc 2761 cgagcagctg aaccaaaatt gtatacgata tccgatcgca tagtataaat ctgtactgtc 2821 tagccttatg tccggtccat gtccttgtcc aaatcaatcc atttgatccg caactcgtag 2881 tctttaggct catcgagcgg cccaaaaatt aggctctatt tattaggcaa attttgtcat 2941 agtttgtatt gcacgcaaat aaaagctaac caaaaaaatg