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LOCUS NM_132394 3091 bp mRNA linear INV 26-DEC-2023 A (CG17841), mRNA. ACCESSION NM_132394 VERSION NM_132394.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3091) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3091) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3091) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3091) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3091) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3091) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3091) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3091) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3091) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3091) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3091) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3091) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3091) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3091) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3091) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3091) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3091) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3091) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Apr 25, 2019 this sequence version replaced NM_132394.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3091 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3091 /gene="CG17841" /locus_tag="Dmel_CG17841" /gene_synonym="anon-EST:Liang-2.12; BcDNA:GH12326; clone 2.12; Dmel\CG17841" /map="9B12-9B14" /db_xref="FLYBASE:FBgn0028480" /db_xref="GeneID:31965" CDS 305..1594 /gene="CG17841" /locus_tag="Dmel_CG17841" /gene_synonym="anon-EST:Liang-2.12; BcDNA:GH12326; clone 2.12; Dmel\CG17841" /note="CG17841 gene product from transcript CG17841-RA; CG17841-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572622.1" /db_xref="FLYBASE:FBpp0071379" /db_xref="GeneID:31965" /db_xref="FLYBASE:FBgn0028480" /translation="MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGS TPGKATGRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVSLT DFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGLIVCKSTCTKS FVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLHLLRITKGQGAVVSNGHAN GKVNGKSASGNNNGSTPTNLHEICDYDGACVQIPKDGRWDFLKYVVTHPVMMIHHVFI GTFGLLVVTYIRGGGHCIYSYMFMMEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLA TFFVCRVCMWPYVMWRYSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLG ALKVFLPQKRRPPNAVLSAKSAAVPTPTPTALINGKN" misc_feature 683..1495 /gene="CG17841" /locus_tag="Dmel_CG17841" /gene_synonym="anon-EST:Liang-2.12; BcDNA:GH12326; clone 2.12; Dmel\CG17841" /note="TRAM, LAG1 and CLN8 homology domains; Region: TLC; smart00724" /db_xref="CDD:214789" ORIGIN 1 cacaatcgaa gaacgattgc caccgattgg ttgcgacgac gaatccgcac gaatccatga 61 gccctcgcac cgccgagtct tccagctcct cccgatcgcc cagtcgtcca atcgccatgt 121 cccagacgca gtgccgcctg taaacaaccg ccgagtgaag tccgcagccc gcagtcatcg 181 gtagcagcag cgtcaggagt ccggaatccg tttctcggtt tccgcaacag gttgcgtcgc 241 cttcgccaac agaaggtttt agtgcgagct ttgatcagag cgtggagtgc gtatacgcgc 301 caggatgcag cagcgccgac agccggcgaa tggcaacggc agaggaggag gaaccaccgc 361 cgccgtccgt acggaggagc agcaacaaca gcagcagcca ttgagtcagg atgctggcgc 421 caaggaggcg ggcagcacgc cgggcaaggc aacgggacgc ggctgctatt tctcgctggc 481 cttctccatc ggttcgatgg gcctggcctg cggcagcctg tggcagatac cgaacagcag 541 tgaccgcatc tcgctgcagc gcggcctggt gctcacctcg ctgggattca tctattttgt 601 ctcgctaacg gacttctgca acaaatacct gctggagacg acgcatggac agcgctttcg 661 tcgcaagtac cgcctgatga tgtccgacgt cctggagata accaacaaaa tcgtctcggc 721 aatccaggcc tcattctcct tcttcgtggg actcatcgtc tgcaagtcga cgtgcaccaa 781 atcctttgta tatgcatccc acttcttgat ggaggcgtac ggttggttcg gcactgctta 841 ctttatgtac gacatctggt cgatgtacaa ggtgcacacc cagaagatcg ccgacaagct 901 gcacctgctg cgcattacca agggtcaagg ggcggtggtg agcaatggcc acgccaatgg 961 caaggtcaac ggcaagtcgg ccagcggcaa caacaacggc agcactccaa cgaatctgca 1021 cgagatctgc gactacgatg gagcctgtgt ccagataccc aaggacggca gatgggactt 1081 tctcaagtac gtggtcacgc acccggtcat gatgatacac catgtcttca tcggaacatt 1141 tggattgctg gtggtgacgt acattcgcgg tggcggtcac tgcatctaca gctacatgtt 1201 catgatggag ttctccacgc cgttcgtctc gttgcgcagc atcctgagca ccatgcgcct 1261 caaggattca cgtgtgtaca tcgccaacgg tctgctgatg ctggccacct tcttcgtgtg 1321 ccgcgtctgc atgtggccat acgtgatgtg gcgctacagc ctggccattg aggctgcatc 1381 cctgtggtcg gccatgtggg gcctgccgcg aggatgcctc atcagcatcg ctatactgtt 1441 cttgccacag ctctactggt tctatctgat ggttttgggt gctctcaagg tctttctacc 1501 gcaaaagaga cggccgccca acgcagttct atcggcaaag tcggcggccg tgcccacacc 1561 aacccccacc gcccttataa atggcaaaaa ttagtgcaaa ttgtatttat tttgaggcag 1621 agttccagcc gcatccgttt tgcggagatc ttgctattgt ttatacattt ttaattatac 1681 aacaagaacg acccactact aaccggaaaa ctgaaaaccg gaaacagaaa accatgacgg 1741 acggaggatg aaaaaggcag cggaaacgat ggcgacctac aaatgaaccg aagaccatgg 1801 acagaccctt agtgttaaat aaagacatta tttactaaaa aaaaaacaaa aaaaagaacg 1861 ataaagatga aagtgaagaa ctaagaacaa gaacaaaact aaaaccaaat gcagataaag 1921 cgaataaact atgttgctta ttttttgaag caagccccta accattaacg aattaatgtt 1981 gcattcaatt tccgctatat ccacgaaatc gatgttgtta accgccccga aaaattgtcg 2041 aggggaatga atgcttgtgt taataccata acctgttagt aatatatata ttgcaaatgc 2101 aaatgcggaa gaaggataac tgagcatagc atatgaaagc caaaagaaat tggccagatg 2161 cacagctagg aatgttcgat gtgcatatat taatatacat atacatatat atatatatat 2221 taatattgtg aaagtcacca aggatatata tatagatacc agataaccgg ggaccgtaga 2281 tcatttttcg gccatctatg tagagaatat ggtcaagtgg aaaacgatgt atatatattt 2341 tctgaattgc atatcacgat attttacaag acacaagaat attagtaatc agaattttaa 2401 ttgtgctaca ttagtatctt ctttatctta tcgtttaaat tcaaatgctg taaacttgtt 2461 tgatatattt cgatatgctc attttgcgaa gcttctgatg ttcagacaat ttgatattga 2521 tttgttttac tagattatct ttattaggtt atcaaagaaa tgaaaaaaaa aacacatttg 2581 ttacattttc cacctacgag tataatatat atgtatattg gcctactttg tgcgctttag 2641 cctaacttgc ttagttcatt acattatacc attgaaaact cttccaaaat aaacaaatag 2701 cacaatccag acttataagc attacggtcc ctgaaataga agtcctatat tggttgcttt 2761 taaacgaact acctatgtac gctggacatt ggtgtatatg tttatttgtg aactgtatgt 2821 gaaactagca caaaatcaaa ttttaattga gcttacaaga atataattat atatgtagtt 2881 aactatttat atgtaacaat gtggcgcaac atcgctttgg cttattgcca agtcaatgaa 2941 aaacgcagaa cggcagctcc tatgtgtttt gtttaagacc ggtcccggat tggatgctta 3001 gttatgcgta gatgtatgcg aaacccatgt attttgaact gtacaaatgg atttagccgt 3061 gtgcatagag tagatgaaaa gtgtattttt g