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LOCUS NM_132328 2404 bp mRNA linear INV 26-DEC-2023 variant A, mRNA. ACCESSION NM_132328 VERSION NM_132328.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2404) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2404) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2404) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2404) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2404) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2404) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2404) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2404) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2404) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2404) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2404) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2404) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2404) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2404) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2404) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2404) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2404) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2404) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132328.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2404 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2404 /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="CXXC finger protein 1" /map="8D4-8D4" /db_xref="FLYBASE:FBgn0030121" /db_xref="GeneID:31880" CDS 72..2063 /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="CG17446 gene product from transcript CG17446-RA; CG17446-PA; Cfp1-PA" /codon_start=1 /product="CXXC finger protein 1, isoform A" /protein_id="NP_572556.1" /db_xref="FLYBASE:FBpp0071262" /db_xref="GeneID:31880" /db_xref="FLYBASE:FBgn0030121" /translation="MTDKRKYKKTVSFTRCTAIIFLTTKEVSKQKEEIRREIAREFDL PERKSKIATILKQEDQAYCICRSSDCSRFMIGCDGCEEWYHGDCIGITEKEAKHIKQY YCRRCKKENPELQTIFRLVATERAAASNAASTSLNAPGVGPSGAAPAAAPVASATTSQ QAPPPTTAAAKRKNSSAREPKMGKRCGTCEGCRRPNCNQCDACRVRVGHKPRCIFRTC VVQAATVLKESQATQAGPSRKREKAAPKSRNVQVGPRAASPEIFLNPELQGIRQCYGP NCCSHARPQSKYCSDKCGFNLATKRIFQVLPQRLQEWNLTPSRAAEETRKHLDNIRHK QSLVRFALAELEKRSEELNMVVERAKRSSIDTLGSQDTADMEDEQSMYCITCGHEIHS RTAIKHMEKCFNKYESQASFGSIFKTRMEGNNMFCDFYNPASKTYCKRLRVLCPEHSK DPKVNDTDVCGSPLVNNVFNPTGEFCRAPKKNCFKHYAWEKIRRAEIDLERVRQWLKM DDLMEQERVMRQQLTSRANLLGLMLHSTYNHEVMDELVRKQQEHLVEFEKQRRRLAHQ QQIQTQQKQYQEKQKLMLQQQQQQQQQQQQQQQQQQQQQLQQPQQQQQQQQQQQQEQQ QLQLKPHHLQQLQLQLLQQQQKKAQIPQKTQIIYLQKKT" misc_feature 255..392 /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="PHD finger found in CXXC-type zinc finger protein 1 (Cfp1); Region: PHD_Cfp1; cd15553" /db_xref="CDD:277028" misc_feature order(255..257,288..302,312..314,375..377) /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277028" misc_feature 603..725 /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="CXXC zinc finger domain; Region: zf-CXXC; pfam02008" /db_xref="CDD:366873" misc_feature 963..1667 /gene="Cfp1" /locus_tag="Dmel_CG17446" /gene_synonym="CG17446; CXXC1; dCfp1; dCXXC1; Dmel\CG17446" /note="CpG binding protein C-terminal domain; Region: CpG_bind_C; pfam12269" /db_xref="CDD:463514" ORIGIN 1 aaaaattcca tgaaacttaa ttgacggatt tggatttgga ctggatttgt tgtcggaaag 61 attgctgcga gatgacggac aagcgcaaat ataagaagac cgtaagtttc acccgctgca 121 cggcaatcat atttttaact acaaaggagg tttccaaaca gaaagaggaa atcaggcggg 181 agatcgcacg ggaatttgat ttgcctgagc gcaagtccaa gatagccacc attctaaagc 241 aggaagacca agcgtactgc atatgccgct cctccgactg ctccaggttc atgataggct 301 gcgatggttg cgaggagtgg taccacggcg actgtatagg gatcaccgag aaggaggcta 361 aacacatcaa acagtactac tgccggcgct gcaaaaagga gaatcccgaa ctacaaacca 421 tattccgcct ggtggccacc gaacgggcag ccgcatcgaa cgccgcctct acaagtctca 481 atgccccggg cgtaggtcca tcgggagctg cgcctgctgc tgcaccggtg gcgtccgcaa 541 caaccagcca gcaagcgccg ccaccgacca ctgcggcagc gaagcgcaaa aacagcagcg 601 cccgagaacc aaagatgggc aaacgttgtg gtacctgtga gggatgccgg cgtcccaatt 661 gcaaccagtg cgacgcgtgc cgcgttcgcg tgggccacaa gccgcgctgc atattccgca 721 cctgcgttgt ccaggcggcg acggtcttaa aggagtcgca ggcaactcaa gccggcccaa 781 gtaggaagcg ggaaaaggcg gcacccaaga gtcgcaatgt ccaagtgggc ccgcgggcgg 841 ccagtccgga gatattcctc aatccggagc tacaaggcat ccggcagtgc tacggaccca 901 attgctgctc ccatgcgaga ccgcagagca agtactgcag cgataagtgt ggcttcaatc 961 tggccacaaa acgcatcttc caggttctgc cgcaacgact gcaagagtgg aatctaacgc 1021 ccagccgcgc cgccgaggaa acacgcaagc atcttgataa cattcgtcat aagcagtccc 1081 tggtgcgttt cgcacttgcc gagctagaga agcgctccga agagctcaac atggtggtgg 1141 agcgagccaa acgaagctcc attgatacat tggggtcaca agacaccgcc gacatggagg 1201 acgaacagag catgtactgc atcacctgtg gccacgagat tcactcgcgc actgccatca 1261 agcatatgga gaagtgcttc aacaaatacg aatcgcaggc cagcttcggg agcatattca 1321 aaacgcgaat ggagggaaac aatatgtttt gtgatttcta caatccggca agtaagactt 1381 actgtaagcg attgagagta ttgtgtccgg agcacagcaa ggatccgaag gtgaacgata 1441 cggatgtgtg tggttcgccc ttagtgaaca acgtcttcaa tcccacgggc gagttttgtc 1501 gtgcgccaaa gaagaattgc ttcaagcact acgcctggga gaagatccgg cgtgctgaga 1561 tagatctgga gcgtgtgcgt caatggctca agatggacga cctgatggag caggagcgcg 1621 tgatgcggca gcagctcacc tcgcgagcga acctgctcgg cctgatgctg cactccacct 1681 acaaccacga ggtgatggac gagctggtgc gcaaacagca ggagcatctg gtagagttcg 1741 agaagcagag gcgacgcctg gctcaccagc aacaaataca aacacagcag aaacagtacc 1801 aggaaaagca gaagctaatg ttgcagcaac aacagcaaca gcaacaacag cagcagcaac 1861 aacaacagca gcaacaacag cagcagctgc aacaaccaca gcagcagcaa caacagcagc 1921 agcaacaaca gcaggagcaa cagcaactgc aattgaagcc acatcatctg cagcaacttc 1981 aacttcaact gttgcagcag cagcaaaaga aggcccaaat accacagaaa actcaaatta 2041 tatacctgca gaaaaaaaca tagatttgta gtcccctaat catagcaaga actaacaata 2101 aactgacgtc caagaaatat ttttctacga cagtaatctt tggacttacc cgacgcaaag 2161 tttctagtgt cgcctttctc ctggcaaccg cataacacgc tcgccagctg ttgggtccgc 2221 ttcccggcca gtagtaggtt gctacgcgcc gggatcggcg gtacgcccat gtttgttatt 2281 gaaaactaag catcaaatat gcatttattg atagcaacat gctattaata cattaggcca 2341 gctcaaccgt ggatatcatt cacatggatt acattagcac acaccttaat attagtttat 2401 tagc