Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_132311 2061 bp mRNA linear INV 26-DEC-2023 arthropod-specific, member 9 (SmydA-9), transcript variant A, mRNA. ACCESSION NM_132311 VERSION NM_132311.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2061) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2061) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2061) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2061) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2061) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2061) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2061) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2061) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2061) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2061) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2061) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2061) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2061) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2061) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2061) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2061) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2061) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2061) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132311.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2061 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2061 /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="SET and MYND domain containing, arthropod-specific, member 9" /map="8D1-8D1" /db_xref="FLYBASE:FBgn0030102" /db_xref="GeneID:31859" CDS 264..1766 /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="CG12119 gene product from transcript CG12119-RA; CG12119-PA; SmydA-9-PA" /codon_start=1 /product="SET and MYND domain containing, arthropod-specific, member 9, isoform A" /protein_id="NP_572539.2" /db_xref="FLYBASE:FBpp0071271" /db_xref="GeneID:31859" /db_xref="FLYBASE:FBgn0030102" /translation="MICPKRTSELLDLHLAPFKDKDPAWEIGVSKIAGRGVVATRSLK RGEIIFRDSPLLIGLAAHEEDSLNACSVCLKMLPDTRFMCRQGCGLPVCSLCAKKKQH KSDCDLFKSWGPNEPDVANSVIIRLLCVARAINLSKEQRDLIYCLQANLDNNHRTEVR NAAKCFKNFPTDKKLIEIMNRTVAVLRTNGFDKTTDRTNDNQEFNYRALYPLFGVVNH DCIPNAYYTFEEKTNNMIVRAAVDIPEGFEVTTTYTKLFTGNIARHLFLKMKKSFTCK CSRCSDPTEKGAFISGLYCRDTNCTGLVVPEITGLPHPNWNCLVCKQKSTHAQMMKSQ DFASGAINAKVNSNSLRTLVQYLNEKSDSFIPSSNYVVIDAKMSVLQRLQQGREDCSE ELAHNTRLRYSRDITQLMDKLGLGDSLLRTHLEELLRREEERRAKRLADEAEKQRKLA ELQAKAAEADKLLEVLQKEQSEQSEQAEPAGTADPGTAPAAPPVATAELA" misc_feature 339..>410 /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; Region: SET; cl40432" /db_xref="CDD:394802" misc_feature <810..1103 /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; Region: SET_SMYD; cd20071" /db_xref="CDD:380997" misc_feature order(828..833,873..875,903..917,1020..1022,1026..1028) /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="active site" /db_xref="CDD:380997" misc_feature order(828..833,873..875,903..905,1017..1022,1026..1028) /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:380997" misc_feature order(921..923,1086..1088,1092..1094,1101..1103) /gene="SmydA-9" /locus_tag="Dmel_CG12119" /gene_synonym="CG12119; Dmel\CG12119; lincRNA.971" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:380997" ORIGIN 1 gacagtttac tcacggcagt cgcgaaataa acgctgcagg cgaaccaatc cgttcacccg 61 aaagaattca agaccagaaa cttaaccaca gatcggtggc gagattctcg agattaagct 121 aaagagttaa attgttggag ataaaaaaat cggtgatcag aaatcaagaa tcgagagatt 181 cccaccagtg acttaatttt tgttcaagtg ccgctgtaca ttttttgtgt gatctgcgca 241 aagcagcgat ccttgatccc atcatgatct gcccgaaacg cacctcggag ctgttggatc 301 tgcacttggc gccatttaag gacaaggatc cggcctggga gattggcgtc tcgaagatcg 361 ccggacgcgg agtggtggcc acaaggagtc tcaagcgtgg cgagatcatc ttccgcgaca 421 gtccgctgct gattggactg gccgctcacg aggaggactc cctgaatgcg tgcagtgtgt 481 gcctgaagat gctgccggac acgagattca tgtgccgcca gggatgcgga ttgcccgtgt 541 gctccctgtg cgccaaaaag aagcagcaca agagcgactg cgatctgttc aagtcgtggg 601 gaccgaatga gccggatgtg gccaattcgg tgatcattcg gttgctctgc gtcgccaggg 661 ccatcaatct gagcaaggag cagcgggatc taatctactg cctgcaggcc aatctggata 721 acaatcatcg caccgaggtg cgcaatgcgg ccaagtgctt caagaacttc cccaccgaca 781 agaagctaat cgagatcatg aatcgcaccg tcgccgtcct gcggaccaat ggatttgaca 841 agaccacaga tcggacgaac gacaatcagg agttcaacta tcgggcacta tatccactct 901 ttggcgtcgt caatcacgac tgcattccca acgcctacta caccttcgag gagaagacca 961 ataatatgat cgttcgcgcc gctgtcgata tacccgaggg attcgaggtg accaccacct 1021 acaccaagct cttcaccggc aacatcgccc gccatctctt tctcaagatg aagaagagct 1081 tcacctgcaa atgctcccgc tgctccgatc ccacggagaa aggtgccttc atctcgggcc 1141 tctactgccg cgatacgaac tgcacgggtc tggtggtgcc ggagattacc ggattgccgc 1201 atcccaactg gaactgtctg gtttgcaagc aaaagtccac gcatgcgcag atgatgaagt 1261 cgcaggactt cgctagcggc gccatcaatg ccaaggtcaa ttcgaattcg ctgagaacac 1321 tggtgcagta tctgaacgag aagagcgaca gctttatacc cagctccaac tatgtggtca 1381 tcgatgccaa gatgtccgtg ctgcagcggc tccagcaggg acgcgaggac tgctccgagg 1441 agttggcgca caatacgcgc cttcgctaca gccgtgacat tacccagctg atggacaaac 1501 tgggtctggg cgacagtctg ctgcgcaccc acctggagga gctgctgcgg cgcgaggagg 1561 agcgacgcgc caagcggctg gcggatgagg ccgagaagca gcgcaagctg gccgaactgc 1621 aggccaaggc cgccgaggct gacaagttgc tcgaggtcct gcagaaggag cagtcggagc 1681 agtcggagca ggccgagcca gcgggcacag ctgatcctgg cacggctcct gctgcgccgc 1741 cggtggccac cgctgagttg gcttagatag ccgccgtata cagtcatcta tttcaggact 1801 cgagtaactg gctgagtgga tttctgggat ttctcccaaa tggatgttgt tgaatatgca 1861 actttgagaa actcaatact cgactcctga aaatcggacg cgtagttccc caaacagtcc 1921 ttttggccac ctctcctagt tctgtgttgt gcgtactaaa ctaaataatc gtatctgtat 1981 ctgtatttgt atttttattt atttataata aattaaaaac catactcgac gagtgctgct 2041 aattcccagc gagagtgtgc c